Construct: ORF ccsbBroadEn_15236
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009548.1_s300c1, BRDN0000396653
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF440 (126070)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 126070 | ZNF440 | zinc finger protein 440 | NM_152357.3 | 99.8% | 99.4% | 1751G>T;1759G>A;1762T>G |
| 2 | human | 126070 | ZNF440 | zinc finger protein 440 | XM_005259731.4 | 99.3% | 98.8% | (many diffs) |
| 3 | human | 7620 | ZNF69 | zinc finger protein 69 | NM_001364731.1 | 84.8% | 70.9% | (many diffs) |
| 4 | human | 7620 | ZNF69 | zinc finger protein 69 | NM_001364730.1 | 83.9% | 71.7% | (many diffs) |
| 5 | human | 7620 | ZNF69 | zinc finger protein 69 | XM_006722873.4 | 83.5% | 71.2% | (many diffs) |
| 6 | human | 126070 | ZNF440 | zinc finger protein 440 | XM_017026254.1 | 79.3% | 78.9% | (many diffs) |
| 7 | human | 90594 | ZNF439 | zinc finger protein 439 | NM_001348720.1 | 74.8% | 66.1% | (many diffs) |
| 8 | human | 90594 | ZNF439 | zinc finger protein 439 | NM_001348721.1 | 74.8% | 66.1% | (many diffs) |
| 9 | human | 90594 | ZNF439 | zinc finger protein 439 | NM_152262.2 | 73.2% | 64.7% | (many diffs) |
| 10 | human | 90594 | ZNF439 | zinc finger protein 439 | NM_001348719.1 | 72.6% | 64.3% | (many diffs) |
| 11 | human | 90594 | ZNF439 | zinc finger protein 439 | NM_001348718.1 | 72.3% | 63.9% | (many diffs) |
| 12 | human | 90592 | ZNF700 | zinc finger protein 700 | NM_144566.3 | 71.8% | 54.2% | (many diffs) |
| 13 | human | 90592 | ZNF700 | zinc finger protein 700 | NM_001271848.1 | 71.5% | 53.8% | (many diffs) |
| 14 | human | 90594 | ZNF439 | zinc finger protein 439 | NM_001348722.1 | 69.8% | 61.5% | (many diffs) |
| 15 | human | 90594 | ZNF439 | zinc finger protein 439 | NM_001348723.1 | 69.8% | 61.5% | (many diffs) |
| 16 | human | 284390 | ZNF763 | zinc finger protein 763 | NM_001367172.2 | 58.6% | 50.7% | (many diffs) |
| 17 | human | 284390 | ZNF763 | zinc finger protein 763 | NM_001367173.2 | 58.5% | 50.4% | (many diffs) |
| 18 | human | 284390 | ZNF763 | zinc finger protein 763 | NM_001012753.2 | 58.4% | 50.3% | (many diffs) |
| 19 | human | 90594 | ZNF439 | zinc finger protein 439 | NM_001348724.1 | 55.5% | 48.2% | (many diffs) |
| 20 | human | 90594 | ZNF439 | zinc finger protein 439 | NM_001348725.1 | 55.5% | 48.2% | (many diffs) |
| 21 | human | 284390 | ZNF763 | zinc finger protein 763 | NM_001367174.2 | 39.5% | 32.5% | (many diffs) |
| 22 | human | 7620 | ZNF69 | zinc finger protein 69 | NM_001321163.2 | 22.3% | 21.7% | (many diffs) |
| 23 | human | 7620 | ZNF69 | zinc finger protein 69 | XM_006722874.3 | 22.2% | 21.5% | (many diffs) |
| 24 | human | 7620 | ZNF69 | zinc finger protein 69 | XM_017027231.1 | 22.2% | 21.5% | (many diffs) |
| 25 | human | 7620 | ZNF69 | zinc finger protein 69 | NM_021915.4 | 22.1% | 20.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1851
- ORF length:
- 1785
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CCCAGTGGCT TTTAAGGATG TGGCTGTGAA CTTCACCCAG GAGGAGTGGG 121 CTTTGCTGGA TATTTCCCAG AGGAAACTCT ACAGGGAAGT GATGCTGGAA ACTTTCAGGA 181 ACCTGACCTC TTTAGGAAAA AGGTGGAAAG ACCAGAACAT TGAATATGAG CACCAAAACC 241 CCAGGAGAAA CTTCAGGAGT CTCATAGAAG AAAAAGTCAA TGAAATTAAA GATGACAGTC 301 ATTGTGGAGA AACTTTTACC CCAGTTCCAG ATGACAGACT GAACTTCCAG GAGAAGAAAG 361 CTTCTCCTGA AGTAAAATCA TGTGAAAGCT TTGTGTGTGG AGAAGTTGGC CTAGGTAACT 421 CATCTTTTAA TATGAACATC AGAGGTGACA TTGGACACAA GGCATATGAG TATCAGGAAT 481 ATGGACCAAA GCCATGTAAG TGTCAACAAC CTAAAAAAGC CTTCAGATAC CGCCCCTCCT 541 TTAGAACACA AGAAAGGGAT CACACTGGAG AGAAACCCAA TGCTTGTAAA GTATGTGGAA 601 AAACCTTTAT TTCCCATTCA AGTGTTCGAA GACACATGGT AATGCACAGT GGGGATGGAC 661 CTTATAAATG TAAGTTTTGT GGGAAAGCAT TCCATTGTCT CAGATTATAT CTTATCCATG 721 AAAGAATTCA CACTGGAGAG AAACCATGTG AATGTAAACA GTGTGGTAAA TCCTTTAGTT 781 ATTCTGCTAC CCATCGAATA CATAAAAGAA CTCACACTGG AGAAAAGCCT TATGAATATC 841 AGGAGTGTGG GAAAGCATTT CATAGTCCCA GATCCTATCG TAGACATGAA AGGATTCACA 901 TGGGAGAAAA GGCTTATCAA TGTAAGGAAT GTGGAAAAGC ATTCACGTGT CCCCGTTATG 961 TTCGTATACA TGAAAGGACC CACTCTAGGA AAAATCTCTA TGAATGTAAG CAGTGTGGGA 1021 AAGCATTATC CTCTCTTACA AGTTTTCAAA CACACGTAAG ATTGCACTCT GGAGAAAGAC 1081 CTTATGAATG TAAGATATGT GGAAAAGACT TTTGTTCTGT GAATTCATTT CAAAGACATG 1141 AAAAAATTCA CAGTGGAGAG AAACCCTATA AATGTAAGCA GTGTGGTAAA GCCTTCCCTC 1201 ATTCCAGTTC CCTTCGATAT CATGAAAGGA CTCACACTGG AGAGAAACCC TATGAGTGTA 1261 AGCAATGTGG GAAAGCCTTC AGATCTGCCT CACACCTTCG AGTGCATGGT AGGACTCACA 1321 CTGGAGAGAA ACCGTATGAA TGTAAGGAAT GTGGGAAAGC CTTCAGATAT GTGAATAACC 1381 TTCAAAGTCA TGAAAGGACA CAAACACACA TAagaataca ctctggagaa agacgttata 1441 aatgtaagat atgtgggaaa ggcttttatt gtcccaaatc atttcaaaga catgaaaaaa 1501 ctcacactgg agagaaactc tatgaatgca agcaacgttc agtagttcct tcagtagttc 1561 cagttccttt tgatatcatg aaaggactca cactggagag aagccctata aatgcgagca 1621 atgtgggaaa gccttcagag ctgtgtcaat cctttgaatg catggtagga ctcaccctga 1681 agagaaaccc tatgagtgtg agcaatgacg gaaagccttc agatctgccc cacacctttg 1741 aatacgtggt aggacacaca atggagagaa gccctatgca tgtaaggaat gtgggaaacc 1801 cttcggatct gcccaTAACC TTCAAAGTCA TGAAAGGACA CAAACACACA TACCCAACTT 1861 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac