Construct: ORF ccsbBroadEn_15236

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009548.1_s300c1, BRDN0000396653
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF440 (126070)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 126070 ZNF440 zinc finger protein 440 NM_152357.3 99.8% 99.4% 1751G>T;1759G>A;1762T>G
2 human 126070 ZNF440 zinc finger protein 440 XM_005259731.4 99.3% 98.8% (many diffs)
3 human 7620 ZNF69 zinc finger protein 69 NM_001364731.1 84.8% 70.9% (many diffs)
4 human 7620 ZNF69 zinc finger protein 69 NM_001364730.1 83.9% 71.7% (many diffs)
5 human 7620 ZNF69 zinc finger protein 69 XM_006722873.4 83.5% 71.2% (many diffs)
6 human 126070 ZNF440 zinc finger protein 440 XM_017026254.1 79.3% 78.9% (many diffs)
7 human 90594 ZNF439 zinc finger protein 439 NM_001348720.1 74.8% 66.1% (many diffs)
8 human 90594 ZNF439 zinc finger protein 439 NM_001348721.1 74.8% 66.1% (many diffs)
9 human 90594 ZNF439 zinc finger protein 439 NM_152262.2 73.2% 64.7% (many diffs)
10 human 90594 ZNF439 zinc finger protein 439 NM_001348719.1 72.6% 64.3% (many diffs)
11 human 90594 ZNF439 zinc finger protein 439 NM_001348718.1 72.3% 63.9% (many diffs)
12 human 90592 ZNF700 zinc finger protein 700 NM_144566.3 71.8% 54.2% (many diffs)
13 human 90592 ZNF700 zinc finger protein 700 NM_001271848.1 71.5% 53.8% (many diffs)
14 human 90594 ZNF439 zinc finger protein 439 NM_001348722.1 69.8% 61.5% (many diffs)
15 human 90594 ZNF439 zinc finger protein 439 NM_001348723.1 69.8% 61.5% (many diffs)
16 human 284390 ZNF763 zinc finger protein 763 NM_001367172.2 58.6% 50.7% (many diffs)
17 human 284390 ZNF763 zinc finger protein 763 NM_001367173.2 58.5% 50.4% (many diffs)
18 human 284390 ZNF763 zinc finger protein 763 NM_001012753.2 58.4% 50.3% (many diffs)
19 human 90594 ZNF439 zinc finger protein 439 NM_001348724.1 55.5% 48.2% (many diffs)
20 human 90594 ZNF439 zinc finger protein 439 NM_001348725.1 55.5% 48.2% (many diffs)
21 human 284390 ZNF763 zinc finger protein 763 NM_001367174.2 39.5% 32.5% (many diffs)
22 human 7620 ZNF69 zinc finger protein 69 NM_001321163.2 22.3% 21.7% (many diffs)
23 human 7620 ZNF69 zinc finger protein 69 XM_006722874.3 22.2% 21.5% (many diffs)
24 human 7620 ZNF69 zinc finger protein 69 XM_017027231.1 22.2% 21.5% (many diffs)
25 human 7620 ZNF69 zinc finger protein 69 NM_021915.4 22.1% 20.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1851
ORF length:
1785
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CCCAGTGGCT TTTAAGGATG TGGCTGTGAA CTTCACCCAG GAGGAGTGGG
121CTTTGCTGGA TATTTCCCAG AGGAAACTCT ACAGGGAAGT GATGCTGGAA ACTTTCAGGA
181ACCTGACCTC TTTAGGAAAA AGGTGGAAAG ACCAGAACAT TGAATATGAG CACCAAAACC
241CCAGGAGAAA CTTCAGGAGT CTCATAGAAG AAAAAGTCAA TGAAATTAAA GATGACAGTC
301ATTGTGGAGA AACTTTTACC CCAGTTCCAG ATGACAGACT GAACTTCCAG GAGAAGAAAG
361CTTCTCCTGA AGTAAAATCA TGTGAAAGCT TTGTGTGTGG AGAAGTTGGC CTAGGTAACT
421CATCTTTTAA TATGAACATC AGAGGTGACA TTGGACACAA GGCATATGAG TATCAGGAAT
481ATGGACCAAA GCCATGTAAG TGTCAACAAC CTAAAAAAGC CTTCAGATAC CGCCCCTCCT
541TTAGAACACA AGAAAGGGAT CACACTGGAG AGAAACCCAA TGCTTGTAAA GTATGTGGAA
601AAACCTTTAT TTCCCATTCA AGTGTTCGAA GACACATGGT AATGCACAGT GGGGATGGAC
661CTTATAAATG TAAGTTTTGT GGGAAAGCAT TCCATTGTCT CAGATTATAT CTTATCCATG
721AAAGAATTCA CACTGGAGAG AAACCATGTG AATGTAAACA GTGTGGTAAA TCCTTTAGTT
781ATTCTGCTAC CCATCGAATA CATAAAAGAA CTCACACTGG AGAAAAGCCT TATGAATATC
841AGGAGTGTGG GAAAGCATTT CATAGTCCCA GATCCTATCG TAGACATGAA AGGATTCACA
901TGGGAGAAAA GGCTTATCAA TGTAAGGAAT GTGGAAAAGC ATTCACGTGT CCCCGTTATG
961TTCGTATACA TGAAAGGACC CACTCTAGGA AAAATCTCTA TGAATGTAAG CAGTGTGGGA
1021AAGCATTATC CTCTCTTACA AGTTTTCAAA CACACGTAAG ATTGCACTCT GGAGAAAGAC
1081CTTATGAATG TAAGATATGT GGAAAAGACT TTTGTTCTGT GAATTCATTT CAAAGACATG
1141AAAAAATTCA CAGTGGAGAG AAACCCTATA AATGTAAGCA GTGTGGTAAA GCCTTCCCTC
1201ATTCCAGTTC CCTTCGATAT CATGAAAGGA CTCACACTGG AGAGAAACCC TATGAGTGTA
1261AGCAATGTGG GAAAGCCTTC AGATCTGCCT CACACCTTCG AGTGCATGGT AGGACTCACA
1321CTGGAGAGAA ACCGTATGAA TGTAAGGAAT GTGGGAAAGC CTTCAGATAT GTGAATAACC
1381TTCAAAGTCA TGAAAGGACA CAAACACACA TAagaataca ctctggagaa agacgttata
1441aatgtaagat atgtgggaaa ggcttttatt gtcccaaatc atttcaaaga catgaaaaaa
1501ctcacactgg agagaaactc tatgaatgca agcaacgttc agtagttcct tcagtagttc
1561cagttccttt tgatatcatg aaaggactca cactggagag aagccctata aatgcgagca
1621atgtgggaaa gccttcagag ctgtgtcaat cctttgaatg catggtagga ctcaccctga
1681agagaaaccc tatgagtgtg agcaatgacg gaaagccttc agatctgccc cacacctttg
1741aatacgtggt aggacacaca atggagagaa gccctatgca tgtaaggaat gtgggaaacc
1801cttcggatct gcccaTAACC TTCAAAGTCA TGAAAGGACA CAAACACACA TACCCAACTT
1861TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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