Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_15247
• Subject: NM_001365701.2
• Aligned Length: 3487
• Identities: 2266
• Gaps: 1112

Alignment

Query    1  ATGGCGACCTCCGAGAGGGCTCTCCTGAGGACCAGAGCTGCCTCTCTCCTGAGAGGCTTGGGCAGATCCCGAAC  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCGACCTCCGAGAGGGCTCTCCTGAGGACCAGAGCTGCCTCTCTCCTGAGAGGCTTGGGCAGATCCCGAAC  74

Query   75  TGGAGCCCGATCGTTACAGTTTCGCGCAGAAAAAGAGCGTCAGCCTTGCTGGTCTTTTCCCATGGGGCAGAAGA  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TGGAGCCCGATCGTTACAGTTTCGCGCAGAAAAAGAGCGTCAGCCTTGCTGGTCTTTTCCCATGGGGCAGAAGA  148

Query  149  CGAAAGGCAGCTCTAACATAGCCTCCTCCTACCTGCTCCAGCAGCTCATGCACCGCTATCAGGAGCTGGACTCG  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CGAAAGGCAGCTCTAACATAGCCTCCTCCTACCTGCTCCAGCAGCTCATGCACCGCTATCAGGAGCTGGACTCG  222

Query  223  GACGGAGATGAGGACCAGGGCGAGGGCGAGGCGGGATCCGAGGAGTCCTCAGAGTCCGAAATGCTGAATTTGGA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GACGGAGATGAGGACCAGGGCGAGGGCGAGGCGGGATCCGAGGAGTCCTCAGAGTCCGAAATGCTGAATTTGGA  296

Query  297  GGAGGAATTTGATGGGGTCCTGAGAGAGGAGGCTGTGGCCAAAGCACTCCATCACTTGGGGCGCTCAGGCTCTG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGAGGAATTTGATGGGGTCCTGAGAGAGGAGGCTGTGGCCAAAGCACTCCATCACTTGGGGCGCTCAGGCTCTG  370

Query  371  GGACTGAGCAAGTCTACCTCAATCTAACTTTATCAGGTTGTAATTTAATTGATGTTAGCATTCTCTGTGGATAT  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GGACTGAGCAAGTCTACCTCAATCTAACTTTATCAGGTTGTAATTTAATTGATGTTAGCATTCTCTGTGGATAT  444

Query  445  GTTCATCTACAGAAGTTGGATCTTTCAGCGAATAAAATTGAAGATTTATCTTGTGTGAGTTGTATGCCTTATCT  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GTTCATCTACAGAAGTTGGATCTTTCAGCGAATAAAATTGAAGATTTATCTTGTGTGAGTTGTATGCCTTATCT  518

Query  519  CCTAGAACTTAATGCTTCTCAAAATAATTTGACTACGTTCTTCAATTTCAAGCCACCCAAAAACCTCAAGAAAG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct  519  CCTAGAACTTAATGCTTCTCAAAATAATTTGACTACGTTCTTCAATTTCAAGCCACCCAAAAACCTCAAGAAGG  592

Query  593  CGGATTTTTCCCACAACCAAATTTCTGAAATTTGTGATTTGTCAGCGTATCATGCTCTCACTAAACTAATTTTG  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CGGATTTTTCCCACAACCAAATTTCTGAAATTTGTGATTTGTCAGCGTATCATGCTCTCACTAAACTAATTTTG  666

Query  667  GATGGCAATGAGATAGAAG-AATCAGTGGACTAGAGATGTGCA--CACCTAATTCACCTTAGTTTGGCC-ACAA  736
            ||||||||||||||||||| |||||||||||||||||||||||  .||||||||||||||||||||||| ||||
Sbjct  667  GATGGCAATGAGATAGAAGAAATCAGTGGACTAGAGATGTGCAACAACCTAATTCACCTTAGTTTGGCCAACAA  740

Query  737  T-AGATCACGAC-ATTAATGGCTTAAACAAGTTACCAATCAAAATACTTTGTTCTGAGCAATAACCAGATTGAG  808
            | |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  741  TAAGATCACGACAATTAATGGCTTAAACAAGTTACCAATCAAAATACTTTG-TCTGAGCAATAACCAGATTGAG  813

Query  809  ATGATCACAGGTTTGGAGGATCTGAAAGCCCTGCAGAACCTGGATCTGTCCCACAATCAGATAAGCAGCCTCCA  882
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  814  ATGATCACAGGTTTGGAGGATCTGAAAGCCCTGCAGAACCTGGATCTGTCCCACAATCAGATAAGCAGCCTCCA  887

Query  883  AGGCTTAGAGAATCATGACCTCCTGGAAGTGATCAACCTGGAGGATAATAAGATTGCTGAGCTGAGAGAAATAG  956
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  888  AGGCTTAGAGAATCATGACCTCCTGGAAGTGATCAACCTGGAGGATAATAAGATTGCTGAGCTGAGAGAAATAG  961

Query  957  AATACATTAAAAATTTACCCATCCTTCGAGTTCTCAATCTTCTAGAAAATCCAATTCAGGAAAAGTCTGAATAT  1030
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  962  AATACATTAAAAATTTACCCATCCTTCGAGTTCTCAATCTTCTAGAAAATCCAATTCAGGAAAAGTCTGAATAT  1035

Query 1031  TGGTTCTTCGTAATTTTTATGCTTCTGCGATTAACAGAATTAGATCAGAAGAAGATTAAAGTGGAAGAAAAGGT  1104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036  TGGTTCTTCGTAATTTTTATGCTTCTGCGATTAACAGAATTAGATCAGAAGAAGATTAAAGTGGAAGAAAAGGT  1109

Query 1105  TTCAGCAGTGAATAAATATGATCCTCCCCCTGAAGTGGTTGCAGCTCAAGACCACCTGACCCATGTTGTCAACA  1178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110  TTCAGCAGTGAATAAATATGATCCTCCCCCTGAAGTGGTTGCAGCTCAAGACCACCTGACCCATGTTGTCAACA  1183

Query 1179  GCGTGATGCAGCCGCAGAGGATCTTTGACAGCACTCTTCCCAGCCTGGATGCTCCTTATCCCATGCTGATACTA  1252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184  GCGTGATGCAGCCGCAGAGGATCTTTGACAGCACTCTTCCCAGCCTGGATGCTCCTTATCCCATGCTGATACTA  1257

Query 1253  GCTGGTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTCTGCAGACAGTTTAGCACTTACTTCAGATA  1326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258  GCTGGTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTCTGCAGACAGTTTAGCACTTACTTCAGATA  1331

Query 1327  TGGGGCCTGTCATACCACAAGACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATTTTATCTCTCAAG  1400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332  TGGGGCCTGTCATACCACAAGACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATTTTATCTCTCAAG  1405

Query 1401  ACGTTTTTGATGAAATGGTGAACATGGGGAAATTCATTCTAACATTTAGTTATGGTAATCACAAGTATGGATTA  1474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406  ACGTTTTTGATGAAATGGTGAACATGGGGAAATTCATTCTAACATTTAGTTATGGTAATCACAAGTATGGATTA  1479

Query 1475  AATAGGGACACCGTAGAAGGTATCGCAAGAGATGGTTTGGCAAGCTGTATTCATATGGAAATAGAAGGTGTAAG  1548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480  AATAGGGACACCGTAGAAGGTATCGCAAGAGATGGTTTGGCAAGCTGTATTCATATGGAAATAGAAGGTGTAAG  1553

Query 1549  AAGTTTGAAATATTCCTATTTTGAGCCTCGTTATATCCTGGTGGTGCCCATGAACAAGGAAAAATATGAGGGAT  1622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554  AAGTTTGAAATATTCCTATTTTGAGCCTCGTTATATCCTGGTGGTGCCCATGAACAAGGAAAAATATGAGGGAT  1627

Query 1623  ATTTGCGGAGAAAAGGATTATTCAGTCGTGCAGAAATTGAATTTGCTGTCTCCAGAGTGGACCTTTATAATAAA  1696
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||.||
Sbjct 1628  ATTTGCGGAGAAAAGGATTATTCAGTCGTGCAGAAATTGAATTTGCTGTCTCCAGAGTGGACCTTTAT-ATTAA  1700

Query 1697  AATTAATCAGAATTTTCCGGGGATATTTGAATGAGGTAATCAATGCAGATGATCTGGATG-TGCCTTACAAAAA  1769
            |||||||||||||||||| |||||||||..|||||||||||||||||||||||||||||| |||| |||.||||
Sbjct 1701  AATTAATCAGAATTTTCC-GGGATATTTTGATGAGGTAATCAATGCAGATGATCTGGATGTTGCC-TACCAAAA  1772

Query 1770  ACTGAGTCAGCTCATTAGAGAATACCTTGGATGGAATGAGGAACCTGCCAAGAGTTTGGCTACAACTGCAGATG  1843
            ||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||||||||||||||..|
Sbjct 1773  ACTGAGTCAGCTCATTAGAGAATACCTTGGATTGACTGAGGAACCTGCCAAGAGTTTGGCTACAACTGCAGGAG  1846

Query 1844  -------TA--AAGA------------------CATCCCACCT------------------------GAAACCT  1866
                   ||  ||||                  ||.|.|||||                        |||| ||
Sbjct 1847  CTCCCGCTAGCAAGAAGACTGTCTCTGGGGTGCCAGCACACCTGGTTCCATCTCCCAGGTGCTTGGCGAAA-CT  1919

Query 1867  G-AAGC------------------GCATC---CTACAAAGTATATT----------TCTTCGAATAT----GGG  1904
            | ||||                  |||||   ||..||.|.|.|||          .|.|.|||.||    |.|
Sbjct 1920  GCAAGCAGATGGCCAGATGACAGAGCATCTCTCTGGAATGCAAATTCATGCCAAGGACCTAGAAAATCAGAGCG  1993

Query 1905  TGATTTCCT-----------------------------------------------GCATTCTACAGACAG---  1928
            | |..||||                                               ||.||||.|.|||||   
Sbjct 1994  T-AACTCCTGCCCAGAACCAAGAGCTGGCTCAGGATGGAGAAACCCATCAAAAAGAGCTTTCTCCTGACAGCCA  2066

Query 1929  -------------------AAACTACCTCATTAAAT----TTTGGGCCAAACTT--TCAG-----CCAAAA---  1969
                               .||| ||||||.|..||    ..||||    .|||  ||||     |||..|   
Sbjct 2067  TCTCAATCCTGAGCTCCCTCAAC-ACCTCAGTTCATCAGCACTGGG----TCTTCCTCAGCAGGCCCAGGACCT  2135

Query 1970  ------AAACACCAGCGGAA-----------------AGAGATT---CTATACACAGACAG-CAC-GAGGCAG-  2014
                  |||| |||.|||||                 |||..||   ||| |.|||.|.|| ||| |||.||| 
Sbjct 2136  ATCCCTAAAC-CCAACGGAAGAGGATGTCCAACAATCAGATCTTCCCCTA-AAACAAATAGCCACTGAGACAGA  2207

Query 2015  ---CCCGGCAAGCTCTAA-----------TGGGAAGGATACGCCCTGATCACAC-----------ACTCCTAT-  2062
               |||.|  ||.|..||           ||||.||   .|.|||  |||||.|           .|||||.| 
Sbjct 2208  TGTCCCTG--AGGTGGAAGCCAGTGAGGTTGGGCAG---TCTCCC--ATCACCCCGACCCTGGTGCCTCCTGTG  2274

Query 2063  -----TTC------------------------------------AAAGGGGTC----CAGTACCAG--------  2083
                 |||                                    .||||.|||    .||..||||        
Sbjct 2275  CACCCTTCCCCTCCCTCGTCCCGCAGCCCTCAGCCAGGCCAGGACAAGGAGTCAGGGGAGGCCCAGGTAACCCC  2348

Query 2084  --------CACCTCTCACCAGTGGTCTACACTATTATACA-------------ACT-----------TTAGAAG  2125
                    |.|||||        ||||..||  .|.||||             |||           |.|| ||
Sbjct 2349  TACTGGCCCTCCTCT--------GTCTGAAC--CTCTACAGGGACCTGGCCCCACTCCCCTCAGCCCTCAG-AG  2411

Query 2126  AACTCTGGA-----AAAGTTTTGA-TCTTTGTGAAGACTATTTTAAACCTCCA--------TTTGGACCAT-AT  2184
            ||.||.|||     |||   |||| ||       ||||      ||||.||||        ||...||||| ||
Sbjct 2412  AATTCAGGATGAGGAAA---TTGAGTC-------AGAC------AAACTTCCACCCAGCAGTTCCCACCATGAT  2469

Query 2185  CCT-GAAAAGAGTGGGAAGGATTC------------CTTGGTTTCCATGAAA--TGTT--CATTGTTTC-----  2236
            ||| .||||          |||||            |||||  |.|| ||||  ||.|  |   |.|||     
Sbjct 2470  CCTCCAAAA----------GATTCTTCCCACACTGACTTGG--TGCA-GAAACTTGCTGGC---GATTCTCAGC  2527

Query 2237  -GGTTCTG----------------------------TCCGTGGTCA-----------AAAGAATTGC-------  2263
             .|.||||                            |||| .||||           ..||||.|||       
Sbjct 2528  AAGCTCTGAAGGAGGAAACCTCCAAACCGGAAGCCATCCG-AGTCAGTATCCCTCACCCAGAACTGCCACATCC  2600

Query 2264  ------CTT--------------TCCAGCCTCCGG--AGGGGAG---------CATTTCTTCACACCTAGGA--  2304
                  |||              ..|||||.|.||  |||||||         |.||.|||    |||||.|  
Sbjct 2601  CCAAGACTTAGCAACAGATACCAAGCAGCCCCAGGCCAGGGGAGCCCCGGGGACCTTGCTT----CCTAGAAGC  2670

Query 2305  -----------------------------TCAGGAG-----------CCAGTGACAGTGAGACCGAAGAGACCC  2338
                                         |||||.|           ||||.| ||| |||.||   .|.||||
Sbjct 2671  CGGCTGGCTCCCACTCGGCTGCCCCAGCCTCAGGTGCTGGCTCCCCTCCAGAG-CAG-GAGGCC---CACACCC  2739

Query 2339  GGAAAGCACTACCTAT--------------------------ACAATCATTTTCACATGAAA--AAGA--GTCT  2382
              ||   ||| |||||                          ||||.|    ||.|||.|||  |.||  ||||
Sbjct 2740  --AA---ACT-CCTATCGCCCAGCAGGGAAGAGGCTTTAGGAACAACC----TCCCATCAAACCATGACGGTCT  2803

Query 2383  ------------CACCAAC-------ACAGACA-----ACACTCGGTCCCAGTCATCAGTCGCCCAGGTTCC-A  2431
                        |||||||       .||||||     |.|||...||||| |||      ||||    ||| .
Sbjct 2804  CTCCCAGGCTTCCACCAACCCGGGAAGCAGACACCAGTAAACTTCCTCCCA-TCA------GCCC----TCCGC  2866

Query 2432  ACGTCAAACCCACCCTCCC---TCCAATCCCTCAGG--GCC-----------GCAGG-----------------  2472
            || |||||.|||||  .||   ||..|.|||.||||  |||           |||.|                 
Sbjct 2867  AC-TCAAAACCACC--ACCAAATCTGAGCCCCCAGGCAGCCCACAGTCTTCAGCAAGTCCAGGAAGAGAAGGTC  2937

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 2938  AGTGAGGTGAAACTCCCTCTTATCAGTCCCCCCAGCCAGGAGCAAGCAGAACCTCGCATCCTCAGTCCCGCCCA  3011

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3012  GGAGGAGGCGGCTCAGAAAGTGAGGCTCCCTCGCATTCCTGCTCCTCTTCCGGAGCCAGGGCTGCCCCAGAACT  3085

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3086  CGGGGACTCAGCCTGATCCAAGGCCTGCAAAGGAAAGGAAAGCTCCCCAAGCAGGCAGCTCCTCCAGGAGGAAG  3159

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3160  ATTCCAGACATGCGGGCCTCACCCCACAACCAGGGGCCACTTCAGCAGACAGGGGCTAGGGAAAAAAAGCTCCC  3233

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3234  CAACCAGAAAGGGACGGCTAGAGGACTGGCACCTCTGGAAGAGGCACCACCTGGGAACCACCAGCCAGCCTTGC  3307

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3308  AGCTAGAACCCCACGATCAGCCAGCTCCCACCATGGTGCCCGACGATCCCAACCCCAGCCCTCCTCTTGTTTCT  3381

Query 2473  ---------  2472
                     
Sbjct 3382  TGTCTAAGC  3390