Construct: ORF ccsbBroadEn_15247
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018925.1_s300c1, BRDN0000458221
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- LRGUK (136332)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 136332 | LRGUK | leucine rich repeats and gu... | NM_144648.3 | 99.1% | 27.7% | (many diffs) |
| 2 | human | 136332 | LRGUK | leucine rich repeats and gu... | XM_024446661.1 | 94.3% | 29% | (many diffs) |
| 3 | human | 136332 | LRGUK | leucine rich repeats and gu... | XM_024446659.1 | 93.2% | 28.2% | (many diffs) |
| 4 | human | 136332 | LRGUK | leucine rich repeats and gu... | XM_024446660.1 | 93.2% | 28.2% | (many diffs) |
| 5 | human | 136332 | LRGUK | leucine rich repeats and gu... | XM_024446662.1 | 79.2% | 34.2% | (many diffs) |
| 6 | human | 136332 | LRGUK | leucine rich repeats and gu... | XR_002956408.1 | 76% | (many diffs) | |
| 7 | human | 136332 | LRGUK | leucine rich repeats and gu... | XR_002956409.1 | 74.7% | (many diffs) | |
| 8 | human | 136332 | LRGUK | leucine rich repeats and gu... | XM_024446663.1 | 74.1% | 36.8% | (many diffs) |
| 9 | human | 136332 | LRGUK | leucine rich repeats and gu... | XR_002956410.1 | 73.8% | (many diffs) | |
| 10 | human | 136332 | LRGUK | leucine rich repeats and gu... | NM_001365701.2 | 64.9% | 20.2% | (many diffs) |
| 11 | human | 136332 | LRGUK | leucine rich repeats and gu... | NM_001365700.2 | 64.8% | 20.2% | (many diffs) |
| 12 | human | 136332 | LRGUK | leucine rich repeats and gu... | XM_024446658.1 | 59.2% | 19.8% | (many diffs) |
| 13 | human | 136332 | LRGUK | leucine rich repeats and gu... | XM_017011749.1 | 50.3% | 5.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 794
- ORF length:
- 696
- Sequence:
-
1 CACGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG GCGACCTCCG AGAGGGCTCT 121 CCTGAGGACC AGAGCTGCCT CTCTCCTGAG AGGCTTGGGC AGATCCCGAA CTGGAGCCCG 181 ATCGTTACAG TTTCGCGCAG AAAAAGAGCG TCAGCCTTGC TGGTCTTTTC CCATGGGGCA 241 GAAGACGAAA GGCAGCTCTA ACATAGCCTC CTCCTACCTG CTCCAGCAGC TCATGCACCG 301 CTATCAGGAG CTGGACTCGG ACGGAGATGA GGACCAGGGC GAGGGCGAGG CGGGATCCGA 361 GGAGTCCTCA GAGTCCGAAA TGCTGAATTT GGAGGAGGAA TTTGATGGGG TCCTGAGAGA 421 GGAGGCTGTG GCCAAAGCAC TCCATCACTT GGGGCGCTCA GGCTCTGGGA CTGAGCAAGT 481 CTACCTCAAT CTAACTTTAT CAGGTTGTAA TTTAATTGAT GTTAGCATTC TCTGTGGATA 541 TGTTCATCTA CAGAAGTTGG ATCTTTCAGC GAATAAAATT GAAGATTTAT CTTGTGTGAG 601 TTGTATGCCT TATCTCCTAG AACTTAATGC TTCTCAAAAT AATTTGACTA CGTTCTTCAA 661 TTTCAAGCCA CCCAAAAACC TCAAGAAAGC GGATTTTTCC CACAACCAAA TTTCTGAAAT 721 TTGTGATTTG TCAGCGTATC ATGCTCTCAC TAAACTAATT TTGGATGGCA ATGAGATAGA 781 AGAATCAGTG GACTAGAGAT GTGCACACCT AATTCACCTT AGTTTGGCCA CAATAGATCA 841 CGACATTAAT GGCTTAAACA AGTTACCAAT CAAAATACTT TGTTCTGAGC AATAACCaga 901 ttgagatgat cacaggtttg gaggatctga aagccctgca gaacctggat ctgtcccaca 961 atcagataag cagcctccaa ggcttagaga atcatgacct cctggaagtg atcaacctgg 1021 aggataataa gattgctgag ctgagagaaa tagaatacat taaaaattta cccatccttc 1081 gagttctcaa tcttctagaa aatccaattc aggaaaagtc tgaatattgg ttcttcgtaa 1141 tttttatgct tctgcgatta acagaattag atcagaagaa gattaaagtg gaagaaaagg 1201 tttcagcagt gaataaatat gatcctcccc ctgaagtggt tgcagctcaa gaccacctga 1261 cccatgttgt caacagcgtg atgcagccgc agaggatctt tgacagcact cttcccagcc 1321 tggatgctcc ttatcccatg ctgatactag ctggtcctga agcttgtggg aaacgagagc 1381 ttgcccatcg cctctgcaga cagtttagca cttacttcag atatggggcc tgtcatacca 1441 caagaccacc ttactttgga gaaggggatc gagttgatta tcattttatc tctcaagacg 1501 tttttgatga aatggtgaac atggggaaat tcattctaac atttagttat ggtaatcaca 1561 agtatggatt aaatagggac accgtagaag gtatcgcaag agatggtttg gcaagctgta 1621 ttcatatgga aatagaaggt gtaagaagtt tgaaatattc ctattttgag cctcgttata 1681 tcctggtggt gcccatgaac aaggaaaaat atgagggata tttgcggaga aaaggattat 1741 tcagtcgtgc agaaattgaa tttgctgtct ccagagtgga cctTTATAAT AAAAATTAAT 1801 CAGAATTTTC CGGGGATATT TGAATGAGGT AATCAATGCA GATGATCTGG ATGTGCCTTA 1861 CAAAAAACTG AGTCAGCTCA TTAGAGAATA CCTTGGATGG AATGAGGAAC CTGCCAAGAG 1921 TTTGGCTACA ACTGCAGATG TAAAGACATC CCACCTGAAA CCTGAAGCGC ATCCTACAAA 1981 GTATATTTCT TCGAATATGG GTGATTTCCT GCATTCTACA GACAGAAACT ACCTCATTAA 2041 ATTTTGGGCC AAACTTTCAG CCAAAAAAAC ACCAGCGGAA AGAGATTCTA TACACAGACA 2101 GCACGAGGCA GCCCGGCAAG CTCTAATGGG AAGGATACGC CCTGATCACA CACTCCTATT 2161 TCAAAGGGGT CCAGTACCAG CACCTCTCAC CAGTGGTCTA CACTATTATA CAACTTTAGA 2221 AGAACTCTGG AAAAGTTTTG ATCTTTGTGA AGACTATTTT AAACCTCCAT TTGGACCATA 2281 TCCTGAAAAG AGTGGGAAGG ATTCCTTGGT TTCCATGAAA TGTTCATTGT TTCGGTTCTG 2341 TCCGTGGTCA AAAGAATTGC CTTTCCAGCC TCCGGAGGGG AGCATTTCTT CACACCTAGG 2401 ATCAGGAGCC AGTGACAGTG AGACCGAAGA GACCCGGAAA GCACTACCTA TACAATCATT 2461 TTCACATGAA AAAGAGTCTC ACCAACACAG ACAACACTCG GTCCCAGTCA TCAGTCGCCC 2521 AGGTTCCAAC GTCAAACCCA CCCTCCCTCC AATCCCTCAG GGCCGCAGGT TGCCAACTTT 2581 CTTGTACAAA GTTGGCATTA TAAGAAAGCA TTGCTTATCA ATTTGTTGCA ACGAACAGGT 2641 CACTATCAGT CAAAATAAAA TCATTATTGC CATCCAGGCT GATATCCCC