Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_15247
• Subject: XM_017011749.1
• Aligned Length: 3490
• Identities: 1757
• Gaps: 1622

Alignment

Query    1  ATGGCGACCTCCGAGAGGGCTCTCCTGAGGACCAGAGCTGCCTCTCTCCTGAGAGGCTTGGGCAGATCCCGAAC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TGGAGCCCGATCGTTACAGTTTCGCGCAGAAAAAGAGCGTCAGCCTTGCTGGTCTTTTCCCATGGGGCAGAAGA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CGAAAGGCAGCTCTAACATAGCCTCCTCCTACCTGCTCCAGCAGCTCATGCACCGCTATCAGGAGCTGGACTCG  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  GACGGAGATGAGGACCAGGGCGAGGGCGAGGCGGGATCCGAGGAGTCCTCAGAGTCCGAAATGCTGAATTTGGA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  GGAGGAATTTGATGGGGTCCTGAGAGAGGAGGCTGTGGCCAAAGCACTCCATCACTTGGGGCGCTCAGGCTCTG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  GGACTGAGCAAGTCTACCTCAATCTAACTTTATCAGGTTGTAATTTAATTGATGTTAGCATTCTCTGTGGATAT  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GTTCATCTACAGAAGTTGGATCTTTCAGCGAATAAAATTGAAGATTTATCTTGTGTGAGTTGTATGCCTTATCT  518
                                                                           |||||||||||
Sbjct    1  ---------------------------------------------------------------ATGCCTTATCT  11

Query  519  CCTAGAACTTAATGCTTCTCAAAATAATTTGACTACGTTCTTCAATTTCAAGCCACCCAAAAACCTCAAGAAAG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct   12  CCTAGAACTTAATGCTTCTCAAAATAATTTGACTACGTTCTTCAATTTCAAGCCACCCAAAAACCTCAAGAAGG  85

Query  593  CGGATTTTTCCCACAACCAAATTTCTGAAATTTGTGATTTGTCAGCGTATCATGCTCTCACTAAACTAATTTTG  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   86  CGGATTTTTCCCACAACCAAATTTCTGAAATTTGTGATTTGTCAGCGTATCATGCTCTCACTAAACTAATTTTG  159

Query  667  GATGGCAATGAGATAGAAG-AATCAGTGGACTAGAGATGTGCA--CACCTAATTCACCTTAGTTTGGCC-ACAA  736
            ||||||||||||||||||| |||||||||||||||||||||||  .||||||||||||||||||||||| ||||
Sbjct  160  GATGGCAATGAGATAGAAGAAATCAGTGGACTAGAGATGTGCAACAACCTAATTCACCTTAGTTTGGCCAACAA  233

Query  737  T-AGATCACGAC-ATTAATGGCTTAAACAAGTTACCAATCAAAATACTTTGTTCTGAGCAATAACCAGATTGAG  808
            | |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  234  TAAGATCACGACAATTAATGGCTTAAACAAGTTACCAATCAAAATACTTTG-TCTGAGCAATAACCAGATTGAG  306

Query  809  ATGATCACAGGTTTGGAGGATCTGAAAGCCCTGCAGAACCTGGATCTGTCCCACAATCAGATAAGCAGCCTCCA  882
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  307  ATGATCACAGGTTTGGAGGATCTGAAAGCCCTGCAGAACCTGGATCTGTCCCACAATCAGATAAGCAGCCTCCA  380

Query  883  AGGCTTAGAGAATCATGACCTCCTGGAAGTGATCAACCTGGAGGATAATAAGATTGCTGAGCTGAGAGAAATAG  956
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  381  AGGCTTAGAGAATCATGACCTCCTGGAAGTGATCAACCTGGAGGATAATAAGATTGCTGAGCTGAGAGAAATAG  454

Query  957  AATACATTAAAAATTTACCCATCCTTCGAGTTCTCAATCTTCTAGAAAATCCAATTCAGGAAAAGTCTGAATAT  1030
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  455  AATACATTAAAAATTTACCCATCCTTCGAGTTCTCAATCTTCTAGAAAATCCAATTCAGGAAAAGTCTGAATAT  528

Query 1031  TGGTTCTTCGTAATTTTTATGCTTCTGCGATTAACAGAATTAGATCAGAAGAAGATTAAAGTGGAAGAAAAGGT  1104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  529  TGGTTCTTCGTAATTTTTATGCTTCTGCGATTAACAGAATTAGATCAGAAGAAGATTAAAGTGGAAGAAAAGGT  602

Query 1105  TTCAGCAGTGAATAAATATGATCCTCCCCCTGAAGTGGTTGCAGCTCAAGACCACCTGACCCATGTTGTCAACA  1178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  603  TTCAGCAGTGAATAAATATGATCCTCCCCCTGAAGTGGTTGCAGCTCAAGACCACCTGACCCATGTTGTCAACA  676

Query 1179  GCGTGATGCAGCCGCAGAGGATCTTTGACAGCACTCTTCCCAGCCTGGATGCTCCTTATCCCATGCTGATACTA  1252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct  677  GCGTGATGCAGCCGCAGAGGATCTTTGACAGCACTCTTCCCAGCCTGGATGCCCCTTATCCCATGCTGATACTA  750

Query 1253  GCTGGTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTCTGCAGACAGTTTAGCACTTACTTCAGATA  1326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  751  GCTGGTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTCTGCAGACAGTTTAGCACTTACTTCAGATA  824

Query 1327  TGGGGCCTGTCATACCACAAGACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATTTTATCTCTCAAG  1400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  825  TGGGGCCTGTCATACCACAAGACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATTTTATCTCTCAAG  898

Query 1401  ACGTTTTTGATGAAATGGTGAACATGGGGAAATTCATTCTAACATTTAGTTATGGTAATCACAAGTATGGATTA  1474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  899  ACGTTTTTGATGAAATGGTGAACATGGGGAAATTCATTCTAACATTTAGTTATGGTAATCACAAGTATGGATTA  972

Query 1475  AATAGGGACACCGTAGAAGGTATCGCAAGAGATGGTTTGGCAAGCTGTATTCATATGGAAATAGAAGGTGTAAG  1548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  973  AATAGGGACACCGTAGAAGGTATCGCAAGAGATGGTTTGGCAAGCTGTATTCATATGGAAATAGAAGGTGTAAG  1046

Query 1549  AAGTTTGAAATATTCCTATTTTGAGCCTCGTTATATCCTGGTGGTGCCCATGAACAAGGAAAAATATGAGGGAT  1622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047  AAGTTTGAAATATTCCTATTTTGAGCCTCGTTATATCCTGGTGGTGCCCATGAACAAGGAAAAATATGAGGGAT  1120

Query 1623  ATTTGCGGAGAAAAGGATTATTCAGTCGTGCAGAAATTGAATTTGCTGTCTCCAGAGTGGACCTTTATAATAAA  1696
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||.||
Sbjct 1121  ATTTGCGGAGAAAAGGATTATTCAGTCGTGCAGAAATTGAATTTGCTGTCTCCAGAGTGGACCTTTAT-ATTAA  1193

Query 1697  AATTAATCAGAATTTTCCGGGGATATTTGAATGAGGTAATCAATGCAGATGATCTGGATG-TGCCTTACAAAAA  1769
            |||||||||||||||||| |||||||||..|||||||||||||||||||||||||||||| |||| |||.||||
Sbjct 1194  AATTAATCAGAATTTTCC-GGGATATTTTGATGAGGTAATCAATGCAGATGATCTGGATGTTGCC-TACCAAAA  1265

Query 1770  ACTGAGTCAGCTCATTAGAGAATACCTTGGATGGAATGAGGAACCTGCCAAGAGTTTGGCTACAACTGCAGATG  1843
            ||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||||||||||||||..|
Sbjct 1266  ACTGAGTCAGCTCATTAGAGAATACCTTGGATTGACTGAGGAACCTGCCAAGAGTTTGGCTACAACTGCAGCAG  1339

Query 1844  TA------------AAGA------------------CATCCCACCT------------------------GAAA  1863
            .|            ||||                  ||.|.|||||                        ||||
Sbjct 1340  GAGCTCCCGCTAGCAAGAAGACTGTCTCTGGGGTGCCAGCACACCTGGTTCCATCTCCCAGGTGCTTGGCGAAA  1413

Query 1864  CCTG-AAGC------------------GCATC---CTACAAAGTATATT----------TCTTCGAATAT----  1901
             ||| ||||                  |||||   ||..||.|.|.|||          .|.|.|||.||    
Sbjct 1414  -CTGCAAGCAGATGGCCAGATGACAGAGCATCTCTCTGGAATGCAAATTCATGCCAAGGACCTAGAAAATCAGA  1486

Query 1902  GGGTGATTTCCT-----------------------------------------------GCATTCTACAGACAG  1928
            |.|| |..||||                                               ||.||||.|.|||||
Sbjct 1487  GCGT-AACTCCTGCCCAGAACCAAGAGCTGGCTCAGGATGGAGAAACCCATCAAAAAGAGCTTTCTCCTGACAG  1559

Query 1929  ----------------------AAACTACCTCATTAAAT----TTTGGGCCAAACTT--TCAG-----CCAAAA  1969
                                  .||| ||||||.|..||    ..||||    .|||  ||||     |||..|
Sbjct 1560  CCATCTCAATCCTGAGCTCCCTCAAC-ACCTCAGTTCATCAGCACTGGG----TCTTCCTCAGCAGGCCCAGGA  1628

Query 1970  ---------AAACACCAGCGGAA-----------------AGAGATT---CTATACACAGACAG-CAC-GAGGC  2012
                     |||| |||.|||||                 |||..||   ||| |.|||.|.|| ||| |||.|
Sbjct 1629  CCTATCCCTAAAC-CCAACGGAAGAGGATGTCCAACAATCAGATCTTCCCCTA-AAACAAATAGCCACTGAGAC  1700

Query 2013  AG----CCCGGCAAGCTCTAA-----------TGGGAAGGATACGCCCTGATCACAC-----------ACTCCT  2060
            ||    |||.|  ||.|..||           ||||.||   .|.|||  |||||.|           .|||||
Sbjct 1701  AGATGTCCCTG--AGGTGGAAGCCAGTGAGGTTGGGCAG---TCTCCC--ATCACCCCGACCCTGGTGCCTCCT  1767

Query 2061  AT------TTC------------------------------------AAAGGGGTC----CAGTACCAG-----  2083
            .|      |||                                    .||||.|||    .||..||||     
Sbjct 1768  GTGCACCCTTCCCCTCCCTCGTCCCGCAGCCCTCAGCCAGGCCAGGACAAGGAGTCAGGGGAGGCCCAGGTAAC  1841

Query 2084  -----------CACCTCTCACCAGTGGTCTACACTATTATACA-------------ACT-----------TTAG  2122
                       |.|||||        ||||..||  .|.||||             |||           |.||
Sbjct 1842  CCCTACTGGCCCTCCTCT--------GTCTGAAC--CTCTACAGGGACCTGGCCCCACTCCCCTCAGCCCTCAG  1905

Query 2123  AAGAACTCTGGA-----AAAGTTTTGA-TCTTTGTGAAGACTATTTTAAACCTCCA--------TTTGGACCAT  2182
             ||||.||.|||     |||   |||| ||       ||||      ||||.||||        ||...|||||
Sbjct 1906  -AGAATTCAGGATGAGGAAA---TTGAGTC-------AGAC------AAACTTCCACCCAGCAGTTCCCACCAT  1962

Query 2183  -ATCCT-GAAAAGAGTGGGAAGGATTC------------CTTGGTTTCCATGAAA--TGTT--CATTGTTTC--  2236
             ||||| .||||          |||||            |||||  |.|| ||||  ||.|  |   |.|||  
Sbjct 1963  GATCCTCCAAAA----------GATTCTTCCCACACTGACTTGG--TGCA-GAAACTTGCTGGC---GATTCTC  2020

Query 2237  ----GGTTCTG----------------------------TCCGTGGTCA-----------AAAGAATTGC----  2263
                .|.||||                            |||| .||||           ..||||.|||    
Sbjct 2021  AGCAAGCTCTGAAGGAGGAAACCTCCAAACCGGAAGCCATCCG-AGTCAGTATCCCTCACCCAGAACTGCCACA  2093

Query 2264  ---------CTT--------------TCCAGCCTCCGG--AGGGGAG---------CATTTCTTCACACCTAGG  2303
                     |||              ..|||||.|.||  |||||||         |.||.|||    |||||.
Sbjct 2094  TCCCCAAGACTTAGCAACAGATACCAAGCAGCCCCAGGCCAGGGGAGCCCCGGGGACCTTGCTT----CCTAGA  2163

Query 2304  A-------------------------------TCAGGAG-----------CCAGTGACAGTGAGACCGAAGAGA  2335
            |                               |||||.|           ||||.| ||| |||.||   .|.|
Sbjct 2164  AGCCGGCTGGCTCCCACTCGGCTGCCCCAGCCTCAGGTGCTGGCTCCCCTCCAGAG-CAG-GAGGCC---CACA  2232

Query 2336  CCCGGAAAGCACTACCTAT--------------------------ACAATCATTTTCACATGAAA--AAGA--G  2379
            |||  ||   ||| |||||                          ||||.|    ||.|||.|||  |.||  |
Sbjct 2233  CCC--AA---ACT-CCTATCGCCCAGCAGGGAAGAGGCTTTAGGAACAACC----TCCCATCAAACCATGACGG  2296

Query 2380  TCT------------CACCAAC-------ACAGACA-----ACACTCGGTCCCAGTCATCAGTCGCCCAGGTTC  2429
            |||            |||||||       .||||||     |.|||...||||| |||      ||||    ||
Sbjct 2297  TCTCTCCCAGGCTTCCACCAACCCGGGAAGCAGACACCAGTAAACTTCCTCCCA-TCA------GCCC----TC  2359

Query 2430  C-AACGTCAAACCCACCCTCCC---TCCAATCCCTCAGG--GCC-----------GCAGG--------------  2472
            | .|| |||||.|||||  .||   ||..|.|||.||||  |||           |||.|              
Sbjct 2360  CGCAC-TCAAAACCACC--ACCAAATCTGAGCCCCCAGGCAGCCCACAGTCTTCAGCAAGTCCAGGAAGAGAAG  2430

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 2431  GTCAGTGAGGTGAAACTCCCTCTTATCAGTCCCCCCAGCCAGGAGCAAGCAGAACCTCGCATCCTCAGTCCCGC  2504

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 2505  CCAGGAGGAGGCGGCTCAGAAAGTGAGGCTCCCTCGCATTCCTGCTCCTCTTCCGGAGCCAGGGCTGCCCCAGA  2578

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 2579  ACTCGGGGACTCAGCCTGATCCAAGGCCTGCAAAGGAAAGGAAAGCTCCCCAAGCAGGCAGCTCCTCCAGGAGG  2652

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 2653  AAGATTCCAGACATGCGGGCCTCACCCCACAACCAGGGGCCACTTCAGCAGACAGGGGCTAGGGAAAAAAAGCT  2726

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 2727  CCCCAACCAGAAAGGGACGGCTAGAGGACTGGCACCTCTGGAAGAGGCACCACCTGGGAACCACCAGCCAGCCT  2800

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 2801  TGCAGCTAGAACCCCACGATCAGCCAGCTCCCACCATGGTGCCCGACGATCCCAACCCCAGCCCTCCTCTTGTT  2874

Query 2473  ------------  2472
                        
Sbjct 2875  TCTTGTCTAAGC  2886