Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15253
- Subject:
- XM_017319045.1
- Aligned Length:
- 4029
- Identities:
- 2260
- Gaps:
- 1405
Alignment
Query 1 ATGAAACATCTGTATGGATTATTTCACTATAATCCTATGATGCTTGGACTTGAATCACTTCCAGATCCCACAGA 74
|||||||||||.||.||||||||.||.|||||||..||
Sbjct 1 ------------------------------------ATGATGCTTGGCCTGGAATCACTCCCCGATCCCATGGA 38
Query 75 CACCTGGGAAATTATAGAGACCATTGGTAAAGGCACCTATGGCAAAGTCTACAAGGTAACTAACAAGAGAGATG 148
.||||||||.|||||||||||.|||||.||||||||.||||||||.||||||||||||.|.|||||||||||||
Sbjct 39 GACCTGGGAGATTATAGAGACGATTGGCAAAGGCACTTATGGCAAGGTCTACAAGGTAGCCAACAAGAGAGATG 112
Query 149 GGAGCCTGGCTGCAGTGAAAATTCTGGATCCAGTCAGTGATATGGATGAAGAAATTGAGGCAGAATACAACATT 222
|||||||||||||.|||||..|||||||.||.|||||||||||||||||.||.||||||||.||||||||||||
Sbjct 113 GGAGCCTGGCTGCCGTGAAGGTTCTGGACCCCGTCAGTGATATGGATGAGGAGATTGAGGCTGAATACAACATT 186
Query 223 TTGCAGTTCCTTCCTAATCATCCCAATGTTGTAAAGTTTTATGGGATGTTTTACAAAGCGGATCACTGTGTAGG 296
.|||||||.||.||.|..||||||||.||||||||||||||||||||||||||||||||.||||.||||||.||
Sbjct 187 CTGCAGTTTCTCCCCAGCCATCCCAACGTTGTAAAGTTTTATGGGATGTTTTACAAAGCCGATCGCTGTGTGGG 260
Query 297 GGGACAGCTGTGGCTGGTCCTGGAGCTGTGTAATGGGGGCTCAGTCACTGAGCTTGTCAAAGGTCTACTCAGAT 370
.||||||||.||||||||.|||||||||||||||||||||||.|||||||||||||||||.||.||.||.||.|
Sbjct 261 AGGACAGCTATGGCTGGTTCTGGAGCTGTGTAATGGGGGCTCTGTCACTGAGCTTGTCAAGGGCCTTCTGAGGT 334
Query 371 GTGGCCAGCGGTTGGATGAAGCAATGATCTCATACATCTTGTACGGGGCCCTCTTGGGCCTTCAGCATTTGCAC 444
|.|||.||.||.||||.|||||..||||.||.|||||..||||.||.|||||||||||||||||||||||||||
Sbjct 335 GCGGCAAGAGGCTGGACGAAGCTGTGATTTCCTACATTCTGTATGGAGCCCTCTTGGGCCTTCAGCATTTGCAC 408
Query 445 AACAACCGAATCATCCACCGTGATGTGAAGGGGAATAACATTCTTCTGACAACAGAAGGAGGAGTTAAGCTCGT 518
..|.||||||||||||||||.|||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 409 TGCCACCGAATCATCCACCGAGATGTGAAGGGGAATAACATTCTTCTGACGACAGAAGGAGGAGTTAAGCTCGT 482
Query 519 TGACTTTGGTGTTTCAGCTCAACTCACCAGTACACGTCTGCGGAGAAACACATCTGTTGGCACCCCGTTCTGGA 592
||||||||||||.||.||||||||.||.||.|||||.|||||||||||||||||.|||||.|||||.|||||||
Sbjct 483 TGACTTTGGTGTCTCTGCTCAACTTACAAGCACACGGCTGCGGAGAAACACATCAGTTGGGACCCCATTCTGGA 556
Query 593 TGGCCCCTGAGGTCATTGCCTGTGAGCAGCAGTATGACTCTTCCTATGACGCTCGCTGTGACGTCTGGTCCTTG 666
||||.||||||||||||||.||.|||||||||||||||||.||||||||||||||.||||||||||||||||||
Sbjct 557 TGGCTCCTGAGGTCATTGCTTGCGAGCAGCAGTATGACTCGTCCTATGACGCTCGTTGTGACGTCTGGTCCTTG 630
Query 667 GGGATCACAGCTATTGAACTGGGGGATGGAGACCCTCCCCTCTTTGACATGCATCCTGTGAAAACACTCTTTAA 740
||.||||||||.|||||.|||||.|||||||||||||||||||||||.||||||||||||||||..||||||||
Sbjct 631 GGCATCACAGCCATTGAGCTGGGAGATGGAGACCCTCCCCTCTTTGAAATGCATCCTGTGAAAATGCTCTTTAA 704
Query 741 GATTCCAAGAAATCCTCCACCTACTTTACTTCATCCAGAAAAATGGTGTGAAGAATTCAACCACTTTATTTCAC 814
|||.||||||||.||||||||.|||||.||.||.||.||.|..||||||||.|||||.||||||||.|||||||
Sbjct 705 GATACCAAGAAACCCTCCACCCACTTTGCTGCACCCTGACAGCTGGTGTGAGGAATTTAACCACTTCATTTCAC 778
Query 815 AGTGTCTTATTAAGGATTTTGAAAGGCGACCTTCCGTCACACATCTCCTTGACCACCCATTTATTAAAGGAGTA 888
|||||||||||||.||||||||||.|||.|||||.|||||.||||||.|.|||||||||||.|||||||||...
Sbjct 779 AGTGTCTTATTAAAGATTTTGAAAAGCGGCCTTCGGTCACCCATCTCTTGGACCACCCATTCATTAAAGGAACT 852
Query 889 CATGGAAAAGTTCTGTTTCTGCAAAAACAGCTGGCCAAGGTTCTCCAAGACCAGAAGCATCAAAATCCTGTTGC 962
||.||.||.|||.|||.||||||||||||||||||||||||.|||||.|||||||||||||.|||.||||||||
Sbjct 853 CAAGGCAAGGTTTTGTGTCTGCAAAAACAGCTGGCCAAGGTGCTCCAGGACCAGAAGCATCGAAACCCTGTTGC 926
Query 963 TAAAACCAGGCATGAGAGGATGCATACCAGAAGACCTTATCATGTGGAAGATGCTGAAAAATACTGCCTTGAGG 1036
|||||||||||||||.|||||||||||..|||||||..|||..||.||.|||||.|..||.|.|||||||||||
Sbjct 927 TAAAACCAGGCATGAAAGGATGCATACTGGAAGACCCCATCGAGTAGAGGATGCCGGCAAGTGCTGCCTTGAGG 1000
Query 1037 ATGATTTGGTCAACCTAGAGGTTCTGGATGAGGATACAATTATCCATCAGTTGCAGAAACGTTATGCAGACTTG 1110
||||..|||||||.||.|||||.|||||.|||||.||.||||||.|...|.|||||||.||.|||||||| ||
Sbjct 1001 ATGACCTGGTCAATCTCGAGGTCCTGGACGAGGACACGATTATCTACTGGCTGCAGAAGCGGTATGCAGA--TG 1072
Query 1111 --CTAATTTACACATATGTTGGAGACATCTTAATTGCCTTAAACCCCTTCCAGAATCTAAGCATATACTCTCCA 1182
||.||.|||||.||||||||||||||..|||||||||||||||||||||||||||||||.||||||||||||
Sbjct 1073 CACTGATCTACACCTATGTTGGAGACATTCTAATTGCCTTAAACCCCTTCCAGAATCTAAGTATATACTCTCCA 1146
Query 1183 CAGTTTTCCAGACTTTATCATGGGGTGAAACGCGCCTCCAATCCCCCCCACATATTTGCATCAGCAGATGCTGC 1256
|||||||||||.||||||||||||||||||||..||||.|||||||||||||||||||||||||||||....||
Sbjct 1147 CAGTTTTCCAGGCTTTATCATGGGGTGAAACGTTCCTCGAATCCCCCCCACATATTTGCATCAGCAGACAACGC 1220
Query 1257 TTACCAGTGCATGGTTACTCTCAGCAAAGACCAGTGCATTGTCATCAGCGGAGAGAGTGGCTCTGGGAAGACAG 1330
|||.|||||..||||||||.||||||||||||||||.|||||||||||.|||||.||.||.||.||||||||.|
Sbjct 1221 TTATCAGTGTTTGGTTACTTTCAGCAAAGACCAGTGTATTGTCATCAGTGGAGAAAGCGGATCGGGGAAGACGG 1294
Query 1331 AAAGCGCCCACCTGATTGTTCAACATTTGACTTTCTTGGGAAAGGCCAATAATCAGACCTTGAGAGAGAAAATT 1404
||||||||||.|||||||||||.|||.|.||||||||.||||||||..|.|||||||||.|..|..|||||||.
Sbjct 1295 AAAGCGCCCATCTGATTGTTCAGCATCTTACTTTCTTAGGAAAGGCTGACAATCAGACCCTACGCCAGAAAATC 1368
Query 1405 CTACAAGTCAACTCCCTGGTGGAAGCCTTTGGGAACTCATGCACTGCCATCAATGACAACTCGAGCCGTTTTGG 1478
||.|||||.||||||||||||||||||||.||||||.|..||||.|||||||||||.|||||.|||||.||.||
Sbjct 1369 CTCCAAGTGAACTCCCTGGTGGAAGCCTTCGGGAACGCCCGCACAGCCATCAATGATAACTCCAGCCGCTTCGG 1442
Query 1479 AAAATATCTGGAAATGATGTTTACACCAACTGGAGTTGTGATGGGGGCAAGAATCTCTGAATATCTCCTGGAAA 1552
.||.|||||.|||||||||||.|||||||||||||.|||.|||||||||||||||||.||.|||||.||.||.|
Sbjct 1443 GAAGTATCTAGAAATGATGTTCACACCAACTGGAGCTGTCATGGGGGCAAGAATCTCCGAGTATCTTCTTGAGA 1516
Query 1553 AATCCAGAGTTATAAAACAGGCAGCGAGAGAGAAAAATTTTCATATATTTTACTATATTTATGCTGGTCTTCAT 1626
||||||||||||||.|.|||||||||.||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 1517 AATCCAGAGTTATACAGCAGGCAGCGGGAGAGAAAAATTTTCATATATTTTACTATATTTATGCTGGTCTTTAT 1590
Query 1627 CACCAAAAGAAGCTTTCTGATTTCAGACTTCCTGAGGAAAAACCTCCTAGGTACATAGCTGATGAAACTGGAAG 1700
|||||||||||.||..||||.|||||||||||.||||||||.||||||||.||.|||||||..|||||||.|||
Sbjct 1591 CACCAAAAGAAACTCGCTGAGTTCAGACTTCCCGAGGAAAAGCCTCCTAGATATATAGCTGGGGAAACTGAAAG 1664
Query 1701 GGTGATGCACGACATAACTTCCAAGGAGTCTTACAGAAGACAATTCGAAGCAATTCAGCATTGCTTCAGGATTA 1774
.||.|||||.|||||.||.|||||.|||||||||.|.|.|||.||.||.||.||||||||.|||||||.|||||
Sbjct 1665 AGTCATGCAGGACATCACCTCCAAAGAGTCTTACCGGACACAGTTTGAGGCCATTCAGCACTGCTTCAAGATTA 1738
Query 1775 TAGGGTTCACGGACAAAGAGGTGCACTCAGTGTACAGAATTTTGGCTGGGATTTTGAATATTGGGAACATTGAG 1848
|.||.|||.|.|||||.|||||.|||||.||||||||||||.||||.|||||||||||||||||.|.||||||.
Sbjct 1739 TTGGATTCGCTGACAAGGAGGTACACTCTGTGTACAGAATTCTGGCGGGGATTTTGAATATTGGCAGCATTGAA 1812
Query 1849 TTCGCAGCTATTTCCTCTCAACATCAGACTGATAAAAGTGAGGTGCCCAATGCTGAAGCTTTGCAAAATGCTGC 1922
|||||||||||||||||||||||.||.|||||||||||||||||.||.|||.|.||||||.||.||||.|||||
Sbjct 1813 TTCGCAGCTATTTCCTCTCAACACCAAACTGATAAAAGTGAGGTACCTAATCCAGAAGCTCTGGAAAACGCTGC 1886
Query 1923 CTCTGTTCTGTGCATTAGCCCTGAAGAGCTCCAGGAGGCCCTCACCTCCCACTGTGTGGTCACCCGGGGCGAGA 1996
||..||.||.|||||||||.|.||||||||.||||||||||||||.|||||||||||||||||.||.||.||||
Sbjct 1887 CTGCGTGCTCTGCATTAGCTCCGAAGAGCTTCAGGAGGCCCTCACTTCCCACTGTGTGGTCACACGAGGGGAGA 1960
Query 1997 CCATCATCCGTGCCAACACTGTAGACAGGGCTGCGGACGTTCGAGACGCCATGTCCAAAGCCCTGTATGGGAGG 2070
||||..||.|.||||||||.||.||||||||||..|||||..|.|||||||||||.||.|||||.|||||||||
Sbjct 1961 CCATTGTCAGAGCCAACACAGTGGACAGGGCTGAAGACGTCAGGGACGCCATGTCTAAGGCCCTCTATGGGAGG 2034
Query 2071 CTCTTCAGCTGGATTGTGAATCGCATTAATACACTCCTGCAGCCAGACGAAAACATATGTAGTGCAGGAGG--T 2142
||.||||||||||||||||||||.||.||.|||||||||||||||||..||||||||||||||||| |||| .
Sbjct 2035 CTGTTCAGCTGGATTGTGAATCGAATCAACACACTCCTGCAGCCAGATAAAAACATATGTAGTGCA-GAGGACA 2107
Query 2143 GGAATGAATGTGGGGATCTTGGATATCTTTGGATTCGAGAATTTTCAGAGAAATTCATTTGAGCAGCTCTGCAT 2216
|| |||||||||||.||||||||.||.|||||.||.|||.||||.|||||.|||||.|||||.|||||||||||
Sbjct 2108 GG-ATGAATGTGGGCATCTTGGACATTTTTGGCTTTGAGGATTTCCAGAGGAATTCCTTTGAACAGCTCTGCAT 2180
Query 2217 AAACATCGCCAATGAGCAAATCCAGTACTATTTCAATCAGCATGTTTTTGCTCTTGAGCAGATGGAATATCAGA 2290
|||.||.||||||||.||.|||||||||||.||||||||||||||.||||||||||||||||||||.||..|||
Sbjct 2181 AAATATTGCCAATGAACAGATCCAGTACTACTTCAATCAGCATGTGTTTGCTCTTGAGCAGATGGAGTACAAGA 2254
Query 2291 ATGAAGGCATTGATGCTGTACCCGTGGAATATGAGGACAACCGCCCGCTCTTGGACATGTTCCTCCAGAAACCC 2364
|||||||..|.||||||||.|.||||.|.|||||.|||||.|||||.|||.||||||||||||||||.||||||
Sbjct 2255 ATGAAGGTGTCGATGCTGTCCTCGTGCAGTATGAAGACAATCGCCCACTCCTGGACATGTTCCTCCAAAAACCC 2328
Query 2365 CTGGGACTGCTTGCACTTTTGGATGAGGAAAGTCGGTTTCCCCAAGCAACTGACCAGACCCTGGTTGATAAATT 2438
.||||.||.||.||||||.|||||||.||||||||.||||||||||..||.|||||||||.|||||||||||||
Sbjct 2329 TTGGGCCTTCTGGCACTTCTGGATGAAGAAAGTCGATTTCCCCAAGGGACAGACCAGACCTTGGTTGATAAATT 2402
Query 2439 TGAAGATAATCTACGATGCAAATACTTCTGGAGGCCCAAAGGAGTGGAACTGTGCTTTGGCATTCAGCATTATG 2512
||||||.||.|||||.||.||.|.||||||||||||||||||.||||||||.||.||||||||||||||.||||
Sbjct 2403 TGAAGACAACCTACGGTGTAAGTTCTTCTGGAGGCCCAAAGGTGTGGAACTCTGTTTTGGCATTCAGCACTATG 2476
Query 2513 CTGGAAAGGTATTATATGATGCTTCTGGGGTTCTTGAGAAAAATAGAGACACTCTCCCTGCCGATGTGGTTGTG 2586
|||||..|||.|||||.||||||||||||||||||||||||||.||||||||.||||||||.||.|||||.||.
Sbjct 2477 CTGGACCGGTGTTATACGATGCTTCTGGGGTTCTTGAGAAAAACAGAGACACCCTCCCTGCTGACGTGGTGGTA 2550
Query 2587 GTCCTGAGAACGTCAGAAAACATGCTTCTTCAGCAGCTCTTCTCAATCCCTCTGACCAAAACAGGTAATTTGGC 2660
||||||||.|||||.||.||||..||.||||||||.||.||||||||.|||.||||||||||| |||...|..|
Sbjct 2551 GTCCTGAGGACGTCTGAGAACAAACTCCTTCAGCAACTGTTCTCAATTCCTTTGACCAAAACA-GTACCGTTCC 2623
Query 2661 CCAGACAAGAGCTAGGATAACAGTGGCCTCAAGTTCTTTGCCTCCACATTTCAGTGCTGGGAAAGCCAAGGTGG 2734
||||.
Sbjct 2624 CCAGC--------------------------------------------------------------------- 2628
Query 2735 ACACTCTGGAGGTGATACGGCATCCGGAAGAAACCACCAACATGAAGAGGCAAACTGTGGCTTCTTACTTCCGG 2808
Sbjct 2629 -------------------------------------------------------------------------- 2628
Query 2809 TATTCTCTGATGGACCTGCTCTCCAAAATGGTGGTTGGACAGCCCCACTTTGTGCGCTGCATTAAACCCAATGA 2882
Sbjct 2629 -------------------------------------------------------------------------- 2628
Query 2883 TGACCGAGAGGCCCTGCAGTTCTCTCGAGAGAGGGTGCTGGCCCAGCTCCGCTCCACAGGGATTCTGGAGACAG 2956
Sbjct 2629 -------------------------------------------------------------------------- 2628
Query 2957 TCAGCATCCGCCGCCAGGGCTATTCCCACCGCATCCTTTTTGAAGAATTTGTGAAAAGGTATTATTACTTGGCA 3030
Sbjct 2629 -------------------------------------------------------------------------- 2628
Query 3031 TTCACAGCACATCAAACACCTCTTGCTAGCAAAGAGAGCTGTGTGGCTATCTTGGAAAAGTCCAGATTAGATCA 3104
Sbjct 2629 -------------------------------------------------------------------------- 2628
Query 3105 CTGGGTGCTGGGAAAAACAAAGGTTTTTCTCAAATATTACCATGTTGAGCAATTAAATTTGCTGCTTCGAGAAG 3178
Sbjct 2629 -------------------------------------------------------------------------- 2628
Query 3179 TCATAGGCAGAGTGGTTGTGCTGCAGGCATATACCAAGGGGTGGCTTGGAGCCAGGAGATACAAAAAGGTCAGA 3252
Sbjct 2629 -------------------------------------------------------------------------- 2628
Query 3253 GAGAAGAGAGAGAAGGGAGCCATTGCCATCCCAGTCAGCCTTGGAGAGGATATGATGCTCGGAGGAAATTTAAG 3326
Sbjct 2629 -------------------------------------------------------------------------- 2628
Query 3327 AAAATAAGCAACAGAAGGAATGAGTCTGCTGCTCATAATCAAGCAGGGGACACTTCAAACCAAAGCAGTGGGCC 3400
Sbjct 2629 -------------------------------------------------------------------------- 2628
Query 3401 ACATTCCCCCGTCGCAGCAGGTACGAGGGGAAGTGCCGAGGTTCAAGACTGCAGCGAGCCTGGTGACCATAAAG 3474
Sbjct 2629 -------------------------------------------------------------------------- 2628
Query 3475 TTCTCAGGGGCTCTGTACATCGTAGGAGCCATTCACAAGCAGAATCCAACAATGGCCGTACACAGACTTCAAGC 3548
Sbjct 2629 -------------------------------------------------------------------------- 2628
Query 3549 AACTCTCCTGCTGTCACAGAGAAAAATGGGCATTCACAAGCCCAGAGTTCTCCAAAAGGGTGCGATATCTTCGC 3622
Sbjct 2629 -------------------------------------------------------------------------- 2628
Query 3623 AGGACATGCAAACAAGCACTCGGTTTCTGGGACTGATTTGCTGTCTTCTCGGATATGCCATCCTGCTCCAGATC 3696
Sbjct 2629 -------------------------------------------------------------------------- 2628
Query 3697 AGCAAGGATTGAGTCTCTGGGGAGCCCCTCAAAAGCCTGGTTCAGAAAATGGTCTTGCACAGAAGCATCGAACA 3770
Sbjct 2629 -------------------------------------------------------------------------- 2628
Query 3771 CCTCGCCGACGATGTCAGCAGCCCAAAATGCTGAGTAGCCCTGAGGACACCATGTACTATAACCAGTTAAATGG 3844
Sbjct 2629 -------------------------------------------------------------------------- 2628
Query 3845 AACTCTAGAATATCAAGGGAGCAAGAGGAAGCCAAGAAAACTTGGCCAAATCAAAGTACTTGATGGGGAAGATG 3918
Sbjct 2629 -------------------------------------------------------------------------- 2628
Query 3919 AATATTACAAATCTCTGTCACCAGTGGACTGTATCCCTGAGGAGAACAACTCAGCCCACCCTTCCTTTTTTTCT 3992
Sbjct 2629 -------------------------------------------------------------------------- 2628
Query 3993 TCATCCTCAAAAGGAGACTCTTTTGCTCAACAT 4025
Sbjct 2629 --------------------------------- 2628
