Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_15286
Subject:
NM_001301304.1
Aligned Length:
3630
Identities:
2216
Gaps:
1188

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCCTCACAGCTGCAGGTGTTTTCGCCCCCATCAGTGTCGTCGAGTGCCTTCTGCAGTGCAAAGAAACTGAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AATAGAGCCCTCTGGCTGGGATGTTTCAGGACAGAGCAGCAACGACAAATACTATACCCACAGCAAAACCCTCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CAGCTACACAAGGGCAAGCCAGCTCCTCTCACCAGGTAGCAAATTTCAATCTTCCTGCTTACGACCAGGGCCTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTTCTCCCAGCTCCTGCCGTGGAGCATATTGTGGTAACAGCTGCTGATAGCTCAGGCAGCGCCGCTACAGCAAC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTTCCAAAGCAGCCAGACCCTGACTCACAGGAGCAACGTTTCTTTGCTTGAGCCATATCAAAAATGTGGATTGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGAGAAAGAGTGAGGAAGTGGAGAGCAACGGTAGCGTGCAGATCATAGAAGAACACCCCCCTCTCATGCTGCAG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AACAGAACCGTGGTGGGTGCTGCTGCCACGACCACCACTGTGACCACCAAGAGTAGCAGTTCCAGCGGAGAAGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGATTACCAGCTGGTCCAGCATGAGATCCTTTGCTCTATGACCAACAGCTATGAAGTCCTGGAGTTCCTAGGCC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GGGGGACATTTGGACAGGTGGCAAAGTGCTGGAAGCGGAGCACCAAGGAAATTGTGGCCATTAAGATCTTGAAG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AACCACCCCTCCTATGCCAGACAAGGACAGATTGAAGTGAGCATCCTTTCCCGCCTAAGCAGTGAAAATGCTGA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TGAGTATAACTTTGTCCGTTCTTATGAGTGTTTTCAGCACAAGAATCATACCTGCCTTGTGTTTGAGATGTTGG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGCAGAACTTGTACGATTTTCTAAAGCAGAACAAGTTTAGCCCACTGCCACTCAAGTACATAAGACCAATCTTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CAGCAGGTGGCCACAGCCCTGATGAAGCTGAAGAGTCTTGGTCTGATTCATGCTGACCTTAAACCTGAAAACAT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AATGCTAGTCGATCCAGTTCGCCAACCCTACCGAGTGAAGGTCATTGACTTTGGTTCTGCTAGTCATGTTTCCA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AAGCCGTGTGTTCAACCTACCTGCAATCACGCTACTACAGAGCTCCTGAAATTATCCTTGGATTACCATTCTGT  1110

Query    1  -----------------------------------------------------ATGG----TTT----TGATGT  13
                                                                 ||||    |||    ||.||.
Sbjct 1111  GAAGCTATTGACATGTGGTCACTGGGCTGTGTAATAGCTGAGCTGTTCCTGGGATGGCCTCTTTATCCTGGTGC  1184

Query   14  T-----------TCAGATTCGTTATATTTCACAAACACAAGGCTTGCCAGCTGAATATCTTCTCAGTGCCGGAA  76
            |           |||||||||.|||||||||||||||||||||.||||||||||.|||||||||||||||||||
Sbjct 1185  TTCAGAATACGATCAGATTCGCTATATTTCACAAACACAAGGCCTGCCAGCTGAGTATCTTCTCAGTGCCGGAA  1258

Query   77  CAAAAACAACCAGGTTTTTCAACAGAGATCCTAATTTGGGGTACCCACTGTGGAGGCTTAAGACACCTGAAGAA  150
            |||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CAAAAACAACCAGGTTTTTTAACAGAGATCCTAATTTGGGGTACCCACTGTGGAGGCTTAAGACACCTGAAGAA  1332

Query  151  CATGAACTGGAGACTGGAATAAAATCAAAAGAAGCTCGGAAGTACATTTTTAATTGCTTAGATGACATGGCTCA  224
            ||||||.||||.|||||||||||.|||||||||||||||||||||||||||||.||.|||||||||||||||||
Sbjct 1333  CATGAATTGGAAACTGGAATAAAGTCAAAAGAAGCTCGGAAGTACATTTTTAACTGTTTAGATGACATGGCTCA  1406

Query  225  GGTGAATATGTCTACGGACCTGGAGGGAACAGACATGTTGGCAGAGAAGGCAGACCGAAGAGAATACATTGATC  298
            |||.|||||||||||.|||.|.|||||.|||||.|||||.||||||||.|||||.||.|||||.||.|||||||
Sbjct 1407  GGTAAATATGTCTACAGACTTAGAGGGGACAGATATGTTAGCAGAGAAAGCAGATCGGAGAGAGTATATTGATC  1480

Query  299  TGTTAAAGAAAATGCTCACAATTGATGCAGATAAGAGAATTACCCCTCTAAAAACTCTTAACCATCAGTTTGTG  372
            |..|||||||||||||.||.||||||||||||||||||||.||.|||||.||.|||||||||||.||.||||||
Sbjct 1481  TTCTAAAGAAAATGCTGACGATTGATGCAGATAAGAGAATCACGCCTCTGAAGACTCTTAACCACCAATTTGTG  1554

Query  373  ACAATGACTCACCTTTTGGATTTTCCACATAGCAATCATGTTAAGTCTTGTTTTCAGAACATGGAGATCTGCAA  446
            ||.||||.||||||..||||.|||||.||.||||..||.||||||||.|||||.||||||||||||||||||||
Sbjct 1555  ACGATGAGTCACCTCCTGGACTTTCCTCACAGCAGCCACGTTAAGTCCTGTTTCCAGAACATGGAGATCTGCAA  1628

Query  447  GCGGAGGGTTCACATGTATGATACAGTGAGTCAGATCAAGAGTCCCTTCACTACACATGTTGCCCCAAATACAA  520
            |||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||.||.||||||||||
Sbjct 1629  GCGGAGGGTTCACATGTATGACACAGTGAGTCAGATCAAGAGTCCCTTCACTACACATGTCGCTCCAAATACAA  1702

Query  521  GCACAAATCTAACCATGAGCTTCAGCAATCAGCTCAATACAGTGCACAATCAGGCCAGTGTTCTAGCTTCCAGT  594
            ||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||||||||||||||||.
Sbjct 1703  GCACAAATCTAACCATGAGCTTCAGCAACCAGCTCAACACAGTGCACAATCAGGCCAGTGTTCTAGCTTCCAGC  1776

Query  595  TCTACTGCAGCAGCTGCTACTCTTTCTCTGGCTAATTCAGATGTCTCACTACTAAACTACCAGTCAGCTTTGTA  668
            ||||||||||||||.|||||.||||||||||||||||||||||||||.||.|||||||||||.||.||||||||
Sbjct 1777  TCTACTGCAGCAGCAGCTACCCTTTCTCTGGCTAATTCAGATGTCTCGCTGCTAAACTACCAATCGGCTTTGTA  1850

Query  669  CCCATCATCTGCTGCACCAGTTCCTGGAGTTGCCCAGCAGGGTGTTTCCTTGCAGCCTGGAACCACCCAGATTT  742
            ||||||.||.||.||.|||||||||||||||||||||||||||||||||||.||.|||||||||||||||||.|
Sbjct 1851  CCCATCGTCGGCAGCGCCAGTTCCTGGAGTTGCCCAGCAGGGTGTTTCCTTACAACCTGGAACCACCCAGATCT  1924

Query  743  GCACTCAGACAGATCCATTCCAACAGACATTTATAGTATGTCCACCTGCGTTTCAAACTGGACTACAAGCAACA  816
            ||||||||||||||||||||||.||.||||||||||||||.||||||||.|||||.||||||||||||||||||
Sbjct 1925  GCACTCAGACAGATCCATTCCAGCAAACATTTATAGTATGCCCACCTGCTTTTCAGACTGGACTACAAGCAACA  1998

Query  817  ACAAAGCATTCTGGATTCCCTGTGAGGATGGATAATGCTGTACCAATTGTACCCCAGGCACCAGCTGCTCAGCC  890
            |||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||.|||||||||||
Sbjct 1999  ACAAAGCATTCTGGATTCCCTGTGAGGATGGATAATGCTGTGCCAATTGTACCCCAGGCGCCTGCTGCTCAGCC  2072

Query  891  ACTACAGATTCAGTCAGGAGTTCTCACGCAGGGAAGCTGTACACCACTAATGGTAGCAACTCTCCACCCTCAAG  964
            .||.|||||.|||||||||||.|||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  GCTGCAGATCCAGTCAGGAGTACTCACACAGGGAAGCTGTACACCACTAATGGTAGCAACTCTCCACCCTCAAG  2146

Query  965  TAGCCACCATCACACCGCAGTATGCGGTGCCCTTTACTCTGAGCTGCGCAGCCGGCCGGCCGGCGCTGGTTGAA  1038
            |||||||||||||.|||||||||||||||||||||||.||||||||||||||.|||||||||||||||||||||
Sbjct 2147  TAGCCACCATCACGCCGCAGTATGCGGTGCCCTTTACCCTGAGCTGCGCAGCAGGCCGGCCGGCGCTGGTTGAA  2220

Query 1039  CAGACTGCCGCTGTACTGCAGGCGTGGCCTGGAGGGACTCAGCAAATTCTCCTGCCTTCAACTTGGCAACAGTT  1112
            ||||||||.|||||||||||.||.|||||||||||.||.||.||||||||||||||||||.|.|||||.|||.|
Sbjct 2221  CAGACTGCTGCTGTACTGCAAGCCTGGCCTGGAGGAACCCAACAAATTCTCCTGCCTTCAGCCTGGCAGCAGCT  2294

Query 1113  GCCTGGGGTAGCTCTACACAACTCTGTCCAGCCCACAGCAATGATTCCAGAGGCCATGGGGAGTGGACAGCAGC  1186
            |||.|||||||||||.|||||||||||||||||..|.|||.||||||||||||||||||||||..|.||.||||
Sbjct 2295  GCCCGGGGTAGCTCTGCACAACTCTGTCCAGCCTGCTGCAGTGATTCCAGAGGCCATGGGGAGCAGCCAACAGC  2368

Query 1187  TAGCTGACTGGAGGAATGCCCACTCTCATGGCAACCAGTACAGCACTATCATGCAGCAGCCATCCTTGCTGACT  1260
            |||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.||||||||.
Sbjct 2369  TAGCTGACTGGAGGAATGCCCACTCTCATGGCAACCAGTACAGCACTATTATGCAGCAGCCATCTTTGCTGACC  2442

Query 1261  AACCATGTGACATTGGCCACTGCTCAGCCTCTGAATGTTGGTGTTGCCCATGTTGTCAGACAACAACAATCCAG  1334
            |||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||.||
Sbjct 2443  AACCATGTGACCTTGGCCACTGCTCAGCCTCTGAATGTTGGTGTTGCCCATGTTGTCAGACAACAACAGTCTAG  2516

Query 1335  TTCCCTCCCTTCGAAGAAGAATAAGCAGTCAGCTCCAGTCTCTTCCAAGTCCTCTCTAGATGTTCTGCCTTCCC  1408
            ||||||||||||.|||||||||||||||||.||||||||.||.|||||.||||||||.||.||.||||||||.|
Sbjct 2517  TTCCCTCCCTTCAAAGAAGAATAAGCAGTCTGCTCCAGTTTCATCCAAATCCTCTCTGGAAGTCCTGCCTTCTC  2590

Query 1409  AAGTCTATTCTCTGGTTGGGAGCAGTCCCCTCCGCACCACATCTTCTTATAATTCCTTGGTCCCTGTCCAAGAT  1482
            ||||.|||||||||||||||||.|||||.||.||.|||||||||||||||||||||.|.||.|||||||||||.
Sbjct 2591  AAGTTTATTCTCTGGTTGGGAGTAGTCCTCTTCGTACCACATCTTCTTATAATTCCCTAGTTCCTGTCCAAGAC  2664

Query 1483  CAGCCACAGCCCATCATCATTCCAGATACTCCCAGCCCTCCTGTGAGTGTCATCACTATCCGAAGTGACACTGA  1556
            ||||..|||||.|||||||||||||||||.||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 2665  CAGCATCAGCCAATCATCATTCCAGATACCCCCAGCCCTCCTGTGAGTGTCATCACTATCCGTAGTGACACTGA  2738

Query 1557  TGAGGAAGAGGACAACAAATACAAGCCCAGTAGCTCTGGACTGAAGCCAAGGTCTAATGTCATCAGTTATGTCA  1630
            |||.|||||||||||||||||||||||||.||||||..|.||||||.|.|||||||||||||||||||||||||
Sbjct 2739  TGAAGAAGAGGACAACAAATACAAGCCCAATAGCTCGAGCCTGAAGGCGAGGTCTAATGTCATCAGTTATGTCA  2812

Query 1631  CTGTCAATGATTCTCCTGACTCTGACTCTTCTTTGAGCAGCCCTTATTCCACTGATACCCTGAGTGCTCTCCGA  1704
            ||||||||||||||||.|||||||||||.||..||||||||||..||.||||.||.||.|||||||||||.||.
Sbjct 2813  CTGTCAATGATTCTCCAGACTCTGACTCCTCCCTGAGCAGCCCACATCCCACAGACACTCTGAGTGCTCTGCGG  2886

Query 1705  GGCAATAGTGGATCCGTTTTGGAGGGGCCTGGCAGAGTTGTGGCAGATGGCACTGGCACCCGCACTATCATTGT  1778
            |||||.|||||..||.||.|||||||.|||||||||..||..||||||||||.|||||||||.|||||||||||
Sbjct 2887  GGCAACAGTGGGACCCTTCTGGAGGGACCTGGCAGACCTGCAGCAGATGGCATTGGCACCCGTACTATCATTGT  2960

Query 1779  GCCTCCACTGAAAACTCAGCTTGGTGACTGCACTGTAGCAACCCAGGCCTCAGGTCTCCTGAGCAATAAGACTA  1852
            ||||||..|||||||.||||||||.|||||||||||||||||.|||||||||||||||||.||||.||||||.|
Sbjct 2961  GCCTCCTTTGAAAACACAGCTTGGCGACTGCACTGTAGCAACACAGGCCTCAGGTCTCCTTAGCAGTAAGACCA  3034

Query 1853  AGCCAGTCGCTTCAGTGAGTGGGCAGTCATCTGGATGCTGTATCACCCCCACAGGGTATCGAGCTCAACGCGGG  1926
            |||||||.||.|||||||||||||||||||||||||||||||||||.|||||.|||||.||.|||||.||.|||
Sbjct 3035  AGCCAGTGGCCTCAGTGAGTGGGCAGTCATCTGGATGCTGTATCACTCCCACGGGGTACCGGGCTCAGCGAGGG  3108

Query 1927  GGGACCAGTGCAGCACAACCACTCAATCTTAGCCAGAACCAGCAGTCATCGGTGGCTCCAACCTCACAGGAGAG  2000
            ||..||||.||.|..||.||||||||.||||||||||||||||||||||||...|||.|||||||.|||||.||
Sbjct 3109  GGAGCCAGCGCGGTGCAGCCACTCAACCTTAGCCAGAACCAGCAGTCATCGTCAGCTTCAACCTCGCAGGAAAG  3182

Query 2001  AAGCAGCAACCCAGCCCCCCGCAGGCAGCAGGCGTTTGTGGCCCCTCTCTCCCAAGCCCCCTACACCTTCCAGC  2074
            ||||||||||||.||.||||||||.||||||||.|||||||||||.||||||||||||||||||.|||||||||
Sbjct 3183  AAGCAGCAACCCTGCTCCCCGCAGACAGCAGGCATTTGTGGCCCCGCTCTCCCAAGCCCCCTACGCCTTCCAGC  3256

Query 2075  ATGGCAGCCCGCTACACTCGACAGGGCACCCACACCTTGCCCCGGCCCCTGCTCACCTGCCAAGCCAGGCTCAT  2148
            ||||||||||.||.||||||||.||||||||||||.|.|||||.||||||||||||||||||||||||.||||.
Sbjct 3257  ATGGCAGCCCACTGCACTCGACGGGGCACCCACACTTGGCCCCAGCCCCTGCTCACCTGCCAAGCCAGCCTCAC  3330

Query 2149  CTGTATACGTATGCTGCCCCGACTTCTGCTGCTGCACTGGGCTCAACCAGCTCCATTGCTCATCTTTTCTCCCC  2222
            |||||||||||.||||||||.|||||||||||||||.|||||||.|||||.||||||||||||||.||||||||
Sbjct 3331  CTGTATACGTACGCTGCCCCCACTTCTGCTGCTGCATTGGGCTCCACCAGTTCCATTGCTCATCTGTTCTCCCC  3404

Query 2223  ACAGGGTTCCTCAAGGCATGCTGCAGCCTATACCACTCACCCTAGCACTTTGGTGCACCAGGTCCCTGTCAGTG  2296
            .||||||||||||||||||||||||||.||||||||.||||||||||||.|||||||.|||||.||||||||||
Sbjct 3405  CCAGGGTTCCTCAAGGCATGCTGCAGCTTATACCACACACCCTAGCACTCTGGTGCATCAGGTTCCTGTCAGTG  3478

Query 2297  TTGGGCCCAGCCTCCTCACTTCTGCCAGCGTGGCCCCTGCTCAGTACCAACACCAGTTTGCCACCCAATCCTAC  2370
            |.||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.||.||||||
Sbjct 3479  TCGGGCCCAGCCTCCTCACTTCTGCCAGTGTGGCCCCTGCTCAGTACCAACACCAGTTTGCCACTCAGTCCTAC  3552

Query 2371  ATTGGGTCTTCCCGAGGCTCAACAATTTACACTGGATACCCCCTG------TCCAAGATCAGCCAGTATTCCTA  2438
            ||.||||||||||||||||||||||||||||||||||||||.|||      .||||||||||.||||||||.||
Sbjct 3553  ATCGGGTCTTCCCGAGGCTCAACAATTTACACTGGATACCCGCTGAGTCCTACCAAGATCAGTCAGTATTCTTA  3626

Query 2439  CTTA  2442
            |||.
Sbjct 3627  CTTG  3630

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