Construct: ORF ccsbBroadEn_15286

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001037.1_s300c1, BRDN0000396846
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HIPK1 (204851)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 204851 HIPK1 homeodomain interacting pro... NM_181358.2 99.4% 99.5% (many diffs)
2 human 204851 HIPK1 homeodomain interacting pro... NM_198269.2 96.9% 96.5% (many diffs)
3 human 204851 HIPK1 homeodomain interacting pro... XM_011540977.3 68.5% 66.3% (many diffs)
4 human 204851 HIPK1 homeodomain interacting pro... NM_001369806.1 66.9% 66.6% (many diffs)
5 human 204851 HIPK1 homeodomain interacting pro... NM_198268.3 66.9% 66.6% (many diffs)
6 human 204851 HIPK1 homeodomain interacting pro... XM_005270613.4 66.9% 66.6% (many diffs)
7 human 204851 HIPK1 homeodomain interacting pro... XM_024453908.1 66.9% 66.6% (many diffs)
8 human 204851 HIPK1 homeodomain interacting pro... NM_001369807.1 66.9% 66.6% (many diffs)
9 human 204851 HIPK1 homeodomain interacting pro... XM_005270610.5 66.9% 66.6% (many diffs)
10 human 204851 HIPK1 homeodomain interacting pro... XM_005270611.5 64.9% 64.6% (many diffs)
11 human 204851 HIPK1 homeodomain interacting pro... XM_006710443.4 64.1% 63.8% (many diffs)
12 human 204851 HIPK1 homeodomain interacting pro... NM_152696.4 55% 52.9% (many diffs)
13 mouse 15257 Hipk1 homeodomain interacting pro... NM_001301304.1 61% 64.7% (many diffs)
14 mouse 15257 Hipk1 homeodomain interacting pro... NM_010432.2 61% 64.7% (many diffs)
15 mouse 15257 Hipk1 homeodomain interacting pro... XM_011240024.1 58.3% 61.9% (many diffs)
16 mouse 15257 Hipk1 homeodomain interacting pro... NM_001301306.1 57.4% 61% (many diffs)
17 mouse 15257 Hipk1 homeodomain interacting pro... NR_125731.1 47.7% (many diffs)
18 mouse 15257 Hipk1 homeodomain interacting pro... XR_375491.3 28% (many diffs)
19 mouse 15257 Hipk1 homeodomain interacting pro... XR_001783665.1 26.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2508
ORF length:
2442
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT TTTGATGTTT CAGATTCGTT ATATTTCACA AACACAAGGC TTGCCAGCTG
121AATATCTTCT CAGTGCCGGA ACAAAAACAA CCAGGTTTTT CAACAGAGAT CCTAATTTGG
181GGTACCCACT GTGGAGGCTT AAGACACCTG AAGAACATGA ACTGGAGACT GGAATAAAAT
241CAAAAGAAGC TCGGAAGTAC ATTTTTAATT GCTTAGATGA CATGGCTCAG GTGAATATGT
301CTACGGACCT GGAGGGAACA GACATGTTGG CAGAGAAGGC AGACCGAAGA GAATACATTG
361ATCTGTTAAA GAAAATGCTC ACAATTGATG CAGATAAGAG AATTACCCCT CTAAAAACTC
421TTAACCATCA GTTTGTGACA ATGACTCACC TTTTGGATTT TCCACATAGC AATCATGTTA
481AGTCTTGTTT TCAGAACATG GAGATCTGCA AGCGGAGGGT TCACATGTAT GATACAGTGA
541GTCAGATCAA GAGTCCCTTC ACTACACATG TTGCCCCAAA TACAAGCACA AATCTAACCA
601TGAGCTTCAG CAATCAGCTC AATACAGTGC ACAATCAGGC CAGTGTTCTA GCTTCCAGTT
661CTACTGCAGC AGCTGCTACT CTTTCTCTGG CTAATTCAGA TGTCTCACTA CTAAACTACC
721AGTCAGCTTT GTACCCATCA TCTGCTGCAC CAGTTCCTGG AGTTGCCCAG CAGGGTGTTT
781CCTTGCAGCC TGGAACCACC CAGATTTGCA CTCAGACAGA TCCATTCCAA CAGACATTTA
841TAGTATGTCC ACCTGCGTTT CAAACTGGAC TACAAGCAAC AACAAAGCAT TCTGGATTCC
901CTGTGAGGAT GGATAATGCT GTACCAATTG TACCCCAGGC ACCAGCTGCT CAGCCACTAC
961AGATTCAGTC AGGAGTTCTC ACGCAGGGAA GCTGTACACC ACTAATGGTA GCAACTCTCC
1021ACCCTCAAGT AGCCACCATC ACACCGCAGT ATGCGGTGCC CTTTACTCTG AGCTGCGCAG
1081CCGGCCGGCC GGCGCTGGTT GAACAGACTG CCGCTGTACT GCAGGCGTGG CCTGGAGGGA
1141CTCAGCAAAT TCTCCTGCCT TCAACTTGGC AACAGTTGCC TGGGGTAGCT CTACACAACT
1201CTGTCCAGCC CACAGCAATG ATTCCAGAGG CCATGGGGAG TGGACAGCAG CTAGCTGACT
1261GGAGGAATGC CCACTCTCAT GGCAACCAGT ACAGCACTAT CATGCAGCAG CCATCCTTGC
1321TGACTAACCA TGTGACATTG GCCACTGCTC AGCCTCTGAA TGTTGGTGTT GCCCATGTTG
1381TCAGACAACA ACAATCCAGT TCCCTCCCTT CGAAGAAGAA TAAGCAGTCA GCTCCAGTCT
1441CTTCCAAGTC CTCTCTAGAT GTTCTGCCTT CCCAAGTCTA TTCTCTGGTT GGGAGCAGTC
1501CCCTCCGCAC CACATCTTCT TATAATTCCT TGGTCCCTGT CCAAGATCAG CCAcagccca
1561tcatcattcc agatactccc agccctcctg tgagtgtcat cactatccga agtgacactg
1621atgaggaaga ggacaacaaa tacaagccca gtagctctgg actgaagcca aggtctaatg
1681tcatcagtta tgtcactgtc aatgattctc ctgactctga ctcttctttg agcagccctt
1741attccactga taccctgagt gctctccgag gcaatagtgg atccgttttg gaggggcctg
1801gcagagttgt ggcagatggc actggcaccc gcactatcat tgtgcctcca ctgaaaactc
1861agcttggtga ctgcactgta gcaacccagg cctcaggtct cctgagcaat aagactaagc
1921cagtcgcttc agtgagtggg cagtcatctg gatgctgtat cacccccaca gggtatcgag
1981ctcaacgcgg ggggaccagt gcagcacaac cactcaatct tagccagaac cagcagtcat
2041cggtggctcc aacctcacag gagagaagca gcaacccagc cccccgcagg cagcaggcgt
2101ttgtggcccc tctctcccaa gccccctaca ccttccagca tggcagcccg ctacactcga
2161cagggcaccc acaccttgcc ccggcccctg ctcacctgcc aagccaggct catctgtata
2221cgtatgctgc cccgacttct gctgctgcac tgggctcaac cagctccatt gctcatcttt
2281tctccccaca gggttcctca aggcatgctg cagcctatac cactcaccct agcactttgg
2341tgcaccaggt ccctgtcagt gttgggccca gcctcctcac ttctgccagc gtggcccctg
2401ctcagtacca acaccagttt gccacccaat cctacattgg gtcttcccga ggctcaacaa
2461tttacactgg ataccCCCTG TCCAAGATCA GCCAGTATTC CTACTTATAC CCAACTTTCT
2521TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)