Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_15300
Subject:
XM_006521787.2
Aligned Length:
3390
Identities:
2633
Gaps:
468

Alignment

Query    1  ATGCAATTCCCCTCGCCTCCAGCCGCGAGGAGCTCCCCGGCGCCGCAGGCAGCGTCCTCCTCCGAAGCAGCTGC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  ACCTGCAACTGGGCAGCCTGGACCCTCGTGCCCTGTTCCCGGGACCTCGCGCAGGGGGCGCCCCGGGACACCCC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CTGCGGGCCGGGTGGAGGAGGAAGAGGAGGAGGAGGAAGAAGACGTGGACAAGGACCCCCATCCTACCCAGAAC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  ACCTGCCTGCGCTGCCGCCACTTCTCTTTAAGGGAGAGGAAAAGAGAGCCTAGGAGAACCATGGGGGGCTGCGA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  AGTCCGGGAATTTCTTTTGCAATTTGGTTTCTTCTTGCCTCTGCTGACAGCGTGGCCAGGCGACTGCAGTCACG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  TCTCCAACAACCAAGTTGTGTTGCTTGATACAACAACTGTACTGGGAGAGCTAGGATGGAAAACATATCCATTA  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  AATGGGTGGGATGCCATCACTGAAATGGATGAACATAATAGGCCCATTCACACATACCAGGTATGTAATGTAAT  518
                                    |||||||||||.|||||||||||.||.||||||||||||||.|||||.||
Sbjct    1  ------------------------ATGGATGAACACAATAGGCCCATACATACATACCAGGTATGCAATGTCAT  50

Query  519  GGAACCAAACCAAAACAACTGGCTTCGTACAAACTGGATCTCCCGTGATGCAGCTCAGAAAATTTATGTGGAAA  592
            ||||||||||||.|||||||||||||||||.|||||||||||.||||||||.||.|||||||||||||||||||
Sbjct   51  GGAACCAAACCAGAACAACTGGCTTCGTACTAACTGGATCTCTCGTGATGCTGCACAGAAAATTTATGTGGAAA  124

Query  593  TGAAATTCACACTAAGGGATTGTAACAGCATCCCATGGGTCTTGGGGACTTGCAAAGAAACATTTAATCTGTTT  666
            ||||.||||||||.||||||||||||||||||||||||||||||||||||||.||||||||.|||||.||||.|
Sbjct  125  TGAAGTTCACACTGAGGGATTGTAACAGCATCCCATGGGTCTTGGGGACTTGTAAAGAAACCTTTAACCTGTAT  198

Query  667  TATATGGAATCAGATGAGTCCCACGGAATTAAATTCAAGCCAAACCAGTATACAAAGATCGACACAATTGCTGC  740
            |||||.|||||.|||||.|||||.||.|..|||||||||||||.|||.||||.|||||||||||||||||||||
Sbjct  199  TATATAGAATCCGATGAATCCCATGGGACAAAATTCAAGCCAAGCCAATATATAAAGATCGACACAATTGCTGC  272

Query  741  TGATGAGAGTTTTACCCAGATGGATTTGGGTGATCGCATCCTCAAACTCAACACTGAAATTCGTGAGGTGGGGC  814
            |||||||||||||||.|||||||||||||||||.||||||||.|||||||||||||||||.|||||||||||||
Sbjct  273  TGATGAGAGTTTTACTCAGATGGATTTGGGTGACCGCATCCTTAAACTCAACACTGAAATCCGTGAGGTGGGGC  346

Query  815  CTATAGAAAGGAAAGGATTTTATCTGGCTTTTCAAGACATTGGGGCGTGCATTGCCCTGGTTTCAGTCCGTGTT  888
            |||||||||||||||||||||||.|||||||||||||.|||||.||.|||||.||.|||||.||||||||.|||
Sbjct  347  CTATAGAAAGGAAAGGATTTTATTTGGCTTTTCAAGATATTGGAGCATGCATCGCTCTGGTCTCAGTCCGAGTT  420

Query  889  TTCTACAAGAAATGCCCCTTCACTGTTCGTAACTTGGCCATGTTTCCTGATACCATTCCAAGGGTTGATTCCTC  962
            ||||||||.||||||||||||||.||.||.||||||||.|||||||||||||||||.||||||||||||||.||
Sbjct  421  TTCTACAAAAAATGCCCCTTCACCGTGCGGAACTTGGCTATGTTTCCTGATACCATCCCAAGGGTTGATTCTTC  494

Query  963  CTCTTTGGTTGAAGTACGGGGTTCTTGTGTGAAGAGTGCTGAAGAGCGTGACACTCCTAAACTGTATTGTGGAG  1036
            |||||||||||||||.|||||.||.|||||.|||||||||||.|||||.||.|||||||||||.||.|||||||
Sbjct  495  CTCTTTGGTTGAAGTGCGGGGCTCATGTGTAAAGAGTGCTGAGGAGCGAGATACTCCTAAACTCTACTGTGGAG  568

Query 1037  CTGATGGAGATTGGCTGGTTCCTCTTGGAAGGTGCATCTGCAGTACAGGATATGAAGAAATTGAGGGTTCTTGC  1110
            |||||||.||||||||.|||||||||||||||||.||||||||||||||.|||||||||||.||||||||||||
Sbjct  569  CTGATGGGGATTGGCTTGTTCCTCTTGGAAGGTGTATCTGCAGTACAGGGTATGAAGAAATCGAGGGTTCTTGC  642

Query 1111  CATGCTTGCAGACCAGGATTCTATAAAGCTTTTGCTGGGAACACAAAATGTTCTAAATGTCCTCCACACAGTTT  1184
            |||||||||||||||||||||||.|||||.|||||||||||||||||||||||.|||||.|||||||||||.|.
Sbjct  643  CATGCTTGCAGACCAGGATTCTACAAAGCATTTGCTGGGAACACAAAATGTTCCAAATGCCCTCCACACAGCTC  716

Query 1185  AACATACATGGAAGCAACTTCTGTCTGTCAGTGTGAAAAGGGTTATTTCCGAGCTGAAAAAGACCCACCTTCTA  1258
            |||.|||.||||||||||.||.||||||||.||||||||||||||.|||||.||.|||||||||||||||||||
Sbjct  717  AACCTACGTGGAAGCAACGTCAGTCTGTCATTGTGAAAAGGGTTACTTCCGGGCAGAAAAAGACCCACCTTCTA  790

Query 1259  TGGCATGTACCAGGCCACCTTCAGCTCCTAGGAATGTGGTTTTTAACATCAATGAAACAGCCCTTATTTTGGAA  1332
            |||||||.||.||.|||||||||||||||||.|||||||.||||||||||||||||||||||||||||||||||
Sbjct  791  TGGCATGCACTAGACCACCTTCAGCTCCTAGAAATGTGGCTTTTAACATCAATGAAACAGCCCTTATTTTGGAA  864

Query 1333  TGGAGCCCACCAAGTGACACAGGAGGGAGAAAAGATCTCACATACAGTGTAATCTGTAAGAAATGTGGCTTAGA  1406
            |||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct  865  TGGAGCCCACCCAGTGACACAGGAGGGAGAAAAGATCTCACATACAGTGTAATCTGTAAGAAATGTGGTTTAGA  938

Query 1407  CACCAGCCAGTGTGAGGACTGTGGTGGAGGACTCCGCTTCATCCCAAGACATACAGGCCTGATCAACAATTCCG  1480
            |||.|.|||||||||||||||||||||||||||||||||||||||||||||.||.||.||||||||||||||.|
Sbjct  939  CACTACCCAGTGTGAGGACTGTGGTGGAGGACTCCGCTTCATCCCAAGACACACTGGACTGATCAACAATTCTG  1012

Query 1481  TGATAGTACTTGACTTTGTGTCTCACGTGAATTACACCTTTGAAATAGAAGCAATGAATGGAGTTTCTGAGTTG  1554
            ||.|||||||.|||||||||||||||||.|||||.|||||||||||||||||.|||||||||||||||||||||
Sbjct 1013  TGGTAGTACTGGACTTTGTGTCTCACGTCAATTATACCTTTGAAATAGAAGCCATGAATGGAGTTTCTGAGTTG  1086

Query 1555  AGTTTTTCTCCCAAGCCATTCACAGCTATTACAGTGACCACGGATCAAGATGCACCTTCCCTGATAGGTGTGGT  1628
            ||..|.||||||||||||||||||||||||||||||||.||.|||||.|||||||||||.|||||.|||.||.|
Sbjct 1087  AGCATCTCTCCCAAGCCATTCACAGCTATTACAGTGACTACAGATCACGATGCACCTTCTCTGATTGGTATGAT  1160

Query 1629  AAGGAAGGACTGGGCATCCCAAAATAGCATTGCCCTATCATGGCAAGCACCTGCTTTTTCCAATGGAGCCATTC  1702
            .||.||||||||||||||.||.||.|||.||||.|||||.||||||||||||||.||||||||||||||.||||
Sbjct 1161  GAGAAAGGACTGGGCATCTCAGAACAGCCTTGCTCTATCGTGGCAAGCACCTGCATTTTCCAATGGAGCTATTC  1234

Query 1703  TGGACTACGAGATCAAGTACTATGAGAAAGAACATGAGCAGCTGACCTACTCTTCCACAAGGTCCAAAGCCCCC  1776
            |||||||.||||||||||||||.||||||||.|||||||||||.|||||.||.|||||.||||||||.|||||.
Sbjct 1235  TGGACTATGAGATCAAGTACTACGAGAAAGAGCATGAGCAGCTCACCTATTCCTCCACGAGGTCCAAGGCCCCA  1308

Query 1777  AGTGTCATCATCACAGGTCTTAAGCCAGCCACCAAATATGTATTTCACATCCGAGTGAGAACTGCGACAGGATA  1850
            ||.||||||.||||.||.||.|||||.|||||||..||..|||||||||||||||||||.||.||||||||.||
Sbjct 1309  AGCGTCATCGTCACGGGCCTCAAGCCCGCCACCACGTACATATTTCACATCCGAGTGAGGACGGCGACAGGCTA  1382

Query 1851  CAGTGGCTACAGTCAGAAATTTGAATTTGAAACAGGAGATGAAACTTCTGACATGGCAGCAGAACAAGGACAGA  1924
            ||||||||||||||||||.||||||||||||||||||||||||||||||||||||||.|||||||||||.||||
Sbjct 1383  CAGTGGCTACAGTCAGAAGTTTGAATTTGAAACAGGAGATGAAACTTCTGACATGGCGGCAGAACAAGGGCAGA  1456

Query 1925  TTCTCGTGATAGCCACCGCCGCTGTTGGCGGATTCACTCTCCTCGTCATCCTCACTTTATTCTTCTTGATCACT  1998
            ||||.||.||||||||.||.||.||.||.||||||||||||.|.|||||||||||..|.||||||.|.||||||
Sbjct 1457  TTCTGGTCATAGCCACTGCAGCCGTCGGGGGATTCACTCTCTTAGTCATCCTCACCCTGTTCTTCCTCATCACT  1530

Query 1999  GGGAGATGTCAGTGGTACATAAAAGCCAAGATGAAGTCAGAAGAGAAGAGAAGAAACCACTTACAGAATGGGCA  2072
            |||||.|||||.|||||||||||.|||||.|||||||||||||||||||||||||..|||||||||||.||.||
Sbjct 1531  GGGAGGTGTCAATGGTACATAAAGGCCAAAATGAAGTCAGAAGAGAAGAGAAGAACTCACTTACAGAACGGCCA  1604

Query 2073  TTTGCGCTTCCCGGGAATTAAAACTTACATTGATCCAGATACATATGAAGACCCATCCCTAGCAGTCCATGAAT  2146
            ..||||||||||||||||||||||.||||||||||||||.||.||||||||||||||||||||||||||.||||
Sbjct 1605  CCTGCGCTTCCCGGGAATTAAAACATACATTGATCCAGACACCTATGAAGACCCATCCCTAGCAGTCCACGAAT  1678

Query 2147  TTGCAAAGGAGATTGATCCCTCAAGAATTCGTATTGAGAGAGTCATTGGGGCAGGTGAATTTGGAGAAGTCTGT  2220
            |||||||.|||||||||||.|||||||||||.|||||||||||.|||||.|||||||||||||||||||||||.
Sbjct 1679  TTGCAAAAGAGATTGATCCTTCAAGAATTCGCATTGAGAGAGTGATTGGAGCAGGTGAATTTGGAGAAGTCTGC  1752

Query 2221  AGTGGGCGTTTGAAGACACCAGGGAAAAGAGAGATCCCAGTTGCCATTAAAACTTTGAAAGGTGGCCACATGGA  2294
            |||||||||||||||||||||||||||||.||||||||||||||.||||||||.||||||||||||||||||||
Sbjct 1753  AGTGGGCGTTTGAAGACACCAGGGAAAAGGGAGATCCCAGTTGCAATTAAAACATTGAAAGGTGGCCACATGGA  1826

Query 2295  TCGGCAAAGAAGAGATTTTCTAAGAGAAGCTAGTATCATGGGCCAGTTTGACCATCCAAACATCATTCGCCTAG  2368
            .||.|||||||||||||||||||||||||||||.||||||||.|||||||||||.|||||||||||||||||||
Sbjct 1827  CCGACAAAGAAGAGATTTTCTAAGAGAAGCTAGCATCATGGGTCAGTTTGACCACCCAAACATCATTCGCCTAG  1900

Query 2369  AAGGGGTTGTCACCAAAAGATCCTTCCCGGCCATTGGGGTGGAGGCGTTTTGCCCCAGCTTCCTGAGGGCAGGG  2442
            ||||.||||||||.|||||||||||||||||.|||||||||||.||.||.||||||||||||||.|||||.|||
Sbjct 1901  AAGGTGTTGTCACTAAAAGATCCTTCCCGGCGATTGGGGTGGAAGCCTTCTGCCCCAGCTTCCTAAGGGCTGGG  1974

Query 2443  TTTTTAAATAGCATCCAGGCCCCGCATCCAGTGCCAGGGGGAGGATCTTTGCCCCCCAGGATTCCTGCTGGCAG  2516
            |||||||||.|||||||.||.||.|||||||||.|.|..|||||.|||.|||||||||||||||||||.||..|
Sbjct 1975  TTTTTAAATGGCATCCAAGCGCCACATCCAGTGACTGCAGGAGGCTCTCTGCCCCCCAGGATTCCTGCAGGTCG  2048

Query 2517  ACCAGTAATGATTGTGGTGGAATATATGGAGAATGGATCCCTAGACTCCTTTTTGCGGAAGCATGATGGCCACT  2590
            .|||||||||||.||.||.||.|||||||||||||||||.||.|||||||||||||||||||||||||||||||
Sbjct 2049  GCCAGTAATGATCGTAGTAGAGTATATGGAGAATGGATCACTGGACTCCTTTTTGCGGAAGCATGATGGCCACT  2122

Query 2591  TCACAGTCATCCAGTTGGTCGGAATGCTCCGAGGCATTGCATCAGGCATGAAGTATCTTTCTGATATGGGTTAT  2664
            ||||.|||||||||||||||||.|||||..|.|||||.||.|||||||||||||||||||||||.|||||.|||
Sbjct 2123  TCACCGTCATCCAGTTGGTCGGCATGCTGAGGGGCATCGCGTCAGGCATGAAGTATCTTTCTGACATGGGATAT  2196

Query 2665  GTTCATCGAGACCTAGCGGCTCGGAATATACTGGTCAATAGCAACTTAGTATGCAAAGTTTCTGATTTTGGTCT  2738
            |||||||||||.||.||.||..||||.||||||||.||.|||||||||||||||||.||.||||||||||||||
Sbjct 2197  GTTCATCGAGATCTTGCCGCGAGGAACATACTGGTGAACAGCAACTTAGTATGCAAGGTCTCTGATTTTGGTCT  2270

Query 2739  CTCCAGAGTGCTGGAAGATGATCCAGAAGCTGCTTATACAACAACTGGTGGAAAAATCCCCATAAGGTGGACAG  2812
            ||||.|||||||||||||||||||||||||.||||||||||||||.||.||.||||||||.|||.|||||||||
Sbjct 2271  CTCCCGAGTGCTGGAAGATGATCCAGAAGCAGCTTATACAACAACGGGAGGGAAAATCCCTATACGGTGGACAG  2344

Query 2813  CCCCAGAAGCCATCGCCTACAGAAAATTCTCCTCAGCAAGCGATGCATGGAGCTATGGCATTGTCATGTGGGAG  2886
            ||||||||||.||.||.||||||||.|||||||||||.||.||.||.||||||||.||.|||||||||||||||
Sbjct 2345  CCCCAGAAGCTATTGCTTACAGAAAGTTCTCCTCAGCCAGTGACGCGTGGAGCTACGGGATTGTCATGTGGGAG  2418

Query 2887  GTCATGTCCTATGGAGAGAGACCTTATTGGGAAATGTCTAACCAAGATGTCATTCTGTCCATTGAAGAAGGGTA  2960
            ||.||||||||||||||||||||.||.|||||||||||.|||||.|||||.||..||||||||||||||||.||
Sbjct 2419  GTGATGTCCTATGGAGAGAGACCGTACTGGGAAATGTCCAACCAGGATGTTATCTTGTCCATTGAAGAAGGTTA  2492

Query 2961  CAGACTTCCAGCTCCCATGGGCTGTCCAGCATCTCTACACCAGCTGATGCTCCACTGCTGGCAGAAGGAGAGAA  3034
            |.|||||||.|||||.||||||||.|||.|.|||||.|||||||||||||||||||||||||||||||||||||
Sbjct 2493  CCGACTTCCTGCTCCGATGGGCTGCCCACCGTCTCTGCACCAGCTGATGCTCCACTGCTGGCAGAAGGAGAGAA  2566

Query 3035  ATCACAGACCAAAATTTACTGACATTGTCAGCTTCCTTGACAAACTGATCCGAAATCCCAGTGCCCTTCACACC  3108
            |.|||||.||||||||.||||||||.||||||||||||||||||||||||||.||.|||||||||||||||||.
Sbjct 2567  ACCACAGGCCAAAATTCACTGACATCGTCAGCTTCCTTGACAAACTGATCCGCAACCCCAGTGCCCTTCACACG  2640

Query 3109  CTGGTGGAGGACATCCTTGTAATGCCAGAGTCCCCTGGTGAAGTTCCGGAATATCCTTTGTTTGTCACAGTTGG  3182
            |||||||||||||||||||||||||||||.|||||||||||.|||||.||||||||.||||||||||||||.||
Sbjct 2641  CTGGTGGAGGACATCCTTGTAATGCCAGAATCCCCTGGTGATGTTCCTGAATATCCATTGTTTGTCACAGTAGG  2714

Query 3183  TGACTGGCTAGATTCTATAAAGATGGGGCAATACAAGAATAACTTCGTGGCAGCAGGGTTTACAACATTTGACC  3256
            |||||||||.||||||||||||||||||||||||||||.|||||||.|||||||.||.||||||||.|||||.|
Sbjct 2715  TGACTGGCTGGATTCTATAAAGATGGGGCAATACAAGAGTAACTTCATGGCAGCGGGTTTTACAACGTTTGATC  2788

Query 3257  TGATTTCAAGAATGAGCATTGATGACATTAGAAGAATTGGAGTCATACTTATTGGACACCAGAGACGAATAGTC  3330
            ||||||||.||||||||||.|||||.|||||..|||||||||||||.||.||||||||.|||||||||||||||
Sbjct 2789  TGATTTCACGAATGAGCATCGATGATATTAGGCGAATTGGAGTCATTCTCATTGGACATCAGAGACGAATAGTC  2862

Query 3331  AGCAGCATACAGACTTTACGTTTACACATGATGCACATACAGGAGAAGGGATTTCATGTA  3390
            |||||||||||.||||||||||||||.|||||||||||||||||.||.||||||||||||
Sbjct 2863  AGCAGCATACAAACTTTACGTTTACATATGATGCACATACAGGAAAAAGGATTTCATGTA  2922

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