Construct: ORF ccsbBroadEn_15300

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019034.1_s300c1, BRDN0000458652
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EPHA6 (285220)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 285220 EPHA6 EPH receptor A6 NM_001080448.3 100% 100%
2 human 285220 EPHA6 EPH receptor A6 XM_006713592.3 98.6% 98.6% 1730_1777del
3 human 285220 EPHA6 EPH receptor A6 XM_017006210.1 94.9% 94.8% 1730_1777del;2434_2435ins126
4 human 285220 EPHA6 EPH receptor A6 XM_017006212.1 86.7% 85.7% (many diffs)
5 human 285220 EPHA6 EPH receptor A6 XM_017006211.1 85.2% 85.1% 0_1ins425;26_66del;1346_1393del
6 human 285220 EPHA6 EPH receptor A6 XM_017006213.1 84.9% 84.9% 0_1ins468;1262_1309del
7 human 285220 EPHA6 EPH receptor A6 XM_017006214.1 66.7% 66.4% (many diffs)
8 human 285220 EPHA6 EPH receptor A6 XM_017006215.1 51.1% 49% (many diffs)
9 human 285220 EPHA6 EPH receptor A6 XR_924126.2 51% (many diffs)
10 human 285220 EPHA6 EPH receptor A6 XM_017006216.1 50.6% 49.4% (many diffs)
11 human 285220 EPHA6 EPH receptor A6 XM_017006217.1 49% 48.9% 0_1ins1723;3_4insAGAAA
12 human 285220 EPHA6 EPH receptor A6 XM_017006218.1 49% 48.9% 0_1ins1723;3_4insAGAAA
13 human 285220 EPHA6 EPH receptor A6 XM_017006219.1 47.3% 47.3% 1607_1609delGAA;1611_1612ins1782
14 human 285220 EPHA6 EPH receptor A6 XM_017006220.1 45.7% 44.5% (many diffs)
15 human 285220 EPHA6 EPH receptor A6 XM_011512705.2 33.9% 32.5% (many diffs)
16 human 285220 EPHA6 EPH receptor A6 NM_001278301.2 33.3% 33% (many diffs)
17 human 285220 EPHA6 EPH receptor A6 XM_011512706.2 32.9% 32.8% 1113_1114insGCTTGCAGACCA;1117G>T;1119_1120ins2259
18 human 285220 EPHA6 EPH receptor A6 XM_011512707.2 32.9% 32.8% 1114_1115insCTTGC;1116A>G;1119_1119delAins2267
19 human 285220 EPHA6 EPH receptor A6 XM_017006223.1 32.4% 27.2% (many diffs)
20 human 285220 EPHA6 EPH receptor A6 NM_001278300.2 32.1% 27.5% (many diffs)
21 human 285220 EPHA6 EPH receptor A6 NM_173655.4 28.4% 26.8% (many diffs)
22 human 285220 EPHA6 EPH receptor A6 XR_001740110.1 25.9% 1_43del;1773_1820del;3482_13069del
23 mouse 13840 Epha6 Eph receptor A6 NM_007938.2 89.7% 95% (many diffs)
24 mouse 13840 Epha6 Eph receptor A6 XM_006521787.2 77.6% 83.8% (many diffs)
25 mouse 13840 Epha6 Eph receptor A6 XM_011245826.2 30.2% 30.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3459
ORF length:
3390
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcaccat gcaattcccc tcgcctccag ccgcgaggag ctccccggcg ccgcaggcag
121cgtcctcctc cgaagcagct gcacctgcaa ctgggcagcc tggaccctcg tgccctgttc
181ccgggacctc gcgcaggggg cgccccggga caccccctgc gggccgggtg gaggaggaag
241aggaggagga ggaagaagac gtggacaagg acccccatcc tacccagaac acctgcctgc
301gctgccgcca cttctcttta agggagagga aaagagagcc taggagaacc atggggggct
361gcgaagtccg ggaatttctt ttgcaatttg gtttcttctt gcctctgctg acagcgtggc
421caggcgactg cagtcacgtc tccaacaacc aagttgtgtt gcttgataca acaactgtac
481tgggagagct aggatggaaa acatatccat taaatgggtg ggatgccatc actgaaatgg
541atgaacataa taggcccatt cacacatacc aggtatgtaa tgtaatggaa ccaaaccaaa
601acaactggct tcgtacaaac tggatctccc gtgatgcagc tcagaaaatt tatgtggaaa
661tgaaattcac actaagggat tgtaacagca tcccatgggt cttggggact tgcaaagaaa
721catttaatct gttttatatg gaatcagatg agtcccacgg aattaaattc aagccaaacc
781agtatacaaa gatcgacaca attgctgctg atgagagttt tacccagatg gatttgggtg
841atcgcatcct caaactcaac actgaaattc gtgaggtggg gcctatagaa aggaaaggat
901tttatctggc ttttcaagac attggggcgt gcattgccct ggtttcagtc cgtgttttct
961acaagaaatg ccccttcact gttcgtaact tggccatgtt tcctgatacc attccaaggg
1021ttgattcctc ctctttggtt gaagtacggg gttcttgtgt gaagagtgct gaagagcgtg
1081acactcctaa actgtattgt ggagctgatg gagattggct ggttcctctt ggaaggtgca
1141tctgcagtac aggatatgaa gaaattgagg gttcttgcca tgcttgcaga ccaggattct
1201ataaagcttt tgctgggaac acaaaatgtt ctaaatgtcc tccacacagt ttaacataca
1261tggaagcaac ttctgtctgt cagtgtgaaa agggttattt ccgagctgaa aaagacccac
1321cttctatggc atgtaccagg ccaccttcag ctcctaggaa tgtggttttt aacatcaatg
1381aaacagccct tattttggaa tggagcccac caagtgacac aggagggaga aaagatctca
1441catacagtgt aatctgtaag aaatgtggct tagacaccag ccagtgtgag gactgtggtg
1501gaggactccg cttcatccca agacatacag gcctgatcaa caattccgtg atagtacttg
1561actttgtgtc tcacgtgaat tacacctttg aaatagaagc aatgaatgga gtttctgagt
1621tgagtttttc tcccaagcca ttcacagcta ttacagtgac cacggatcaa gatgcacctt
1681ccctgatagg tgtggtaagg aaggactggg catcccaaaa tagcattgcc ctatcatggc
1741aagcacctgc tttttccaat ggagccattc tggactacga gatcaagtac tatgagaaag
1801aacatgagca gctgacctac tcttccacaa ggtccaaagc ccccagtgtc atcatcacag
1861gtcttaagcc agccaccaaa tatgtatttc acatccgagt gagaactgcg acaggataca
1921gtggctacag tcagaaattt gaatttgaaa caggagatga aacttctgac atggcagcag
1981aacaaggaca gattctcgtg atagccaccg ccgctgttgg cggattcact ctcctcgtca
2041tcctcacttt attcttcttg atcactggga gatgtcagtg gtacataaaa gccaagatga
2101agtcagaaga gaagagaaga aaccacttac agaatgggca tttgcgcttc ccgggaatta
2161aaacttacat tgatccagat acatatgaag acccatccct agcagtccat gaatttgcaa
2221aggagattga tccctcaaga attcgtattg agagagtcat tggggcaggt gaatttggag
2281aagtctgtag tgggcgtttg aagacaccag ggaaaagaga gatcccagtt gccattaaaa
2341ctttgaaagg tggccacatg gatcggcaaa gaagagattt tctaagagaa gctagtatca
2401tgggccagtt tgaccatcca aacatcattc gcctagaagg ggttgtcacc aaaagatcct
2461tcccggccat tggggtggag gcgttttgcc ccagcttcct gagggcaggg tttttaaata
2521gcatccaggc cccgcatcca gtgccagggg gaggatcttt gccccccagg attcctgctg
2581gcagaccagt aatgattgtg gtggaatata tggagaatgg atccctagac tcctttttgc
2641ggaagcatga tggccacttc acagtcatcc agttggtcgg aatgctccga ggcattgcat
2701caggcatgaa gtatctttct gatatgggtt atgttcatcg agacctagcg gctcggaata
2761tactggtcaa tagcaactta gtatgcaaag tttctgattt tggtctctcc agagtgctgg
2821aagatgatcc agaagctgct tatacaacaa ctggtggaaa aatccccata aggtggacag
2881ccccagaagc catcgcctac agaaaattct cctcagcaag cgatgcatgg agctatggca
2941ttgtcatgtg ggaggtcatg tcctatggag agagacctta ttgggaaatg tctaaccaag
3001atgtcattct gtccattgaa gaagggtaca gacttccagc tcccatgggc tgtccagcat
3061ctctacacca gctgatgctc cactgctggc agaaggagag aaatcacaga ccaaaattta
3121ctgacattgt cagcttcctt gacaaactga tccgaaatcc cagtgccctt cacaccctgg
3181tggaggacat ccttgtaatg ccagagtccc ctggtgaagt tccggaatat cctttgtttg
3241tcacagttgg tgactggcta gattctataa agatggggca atacaagaat aacttcgtgg
3301cagcagggtt tacaacattt gacctgattt caagaatgag cattgatgac attagaagaa
3361ttggagtcat acttattgga caccagagac gaatagtcag cagcatacag actttacgtt
3421tacacatgat gcacatacag gagaagggat ttcatgtatt gccaactttc ttgtacaaag
3481ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

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