Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15308
- Subject:
- NR_144521.1
- Aligned Length:
- 1876
- Identities:
- 938
- Gaps:
- 933
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGGCTCCGAAGTCGCTGGGTACACGGCGCCTCCTCCGAGCGACACGCGCGGGAGCTGGGGCTGGGGCTGTTCGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCTGCTCGAAGCTTCGTCACCGTCGCCCTGTGGGTGCAGTGCAGCATTGTACTGCAAGTCAATCGATACAATA 148
Query 1 ---------------------ATGGAAAAGTATGAAAAATTAGCTAAGACTGGAGAAGGGTCTTATGGGGTTGT 53
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ATTTAAGTCACTTCAGCTATAATGGAAAAGTATGAAAAATTAGCTAAGACTGGAGAAGGGTCTTATGGGGTTGT 222
Query 54 ATTCAAATGCAGAAACAAAACCTCTGGACAAGTAGTAGCTGTTAAAAAATTTGTGGAATCTGAAGATGATCCTG 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ATTCAAATGCAGAAACAAAACCTCTGGACAAGTAGTAGCTGTTAAAAAATTTGTGGAATCTGAAGATGATCCTG 296
Query 128 TTGTTAAGAAAATAGCACTAAGAGAAATACGTATGTTGAAGCAAATTAAAACAATNCCAAATCTTGTGAACCTC 201
|||||||||||||||||||||||||||||||||||||||||| |||||||||| .||||||||||||||||||
Sbjct 297 TTGTTAAGAAAATAGCACTAAGAGAAATACGTATGTTGAAGC-AATTAAAACA--TCCAAATCTTGTGAACCTC 367
Query 202 ATCGAAGGTGTTCAGGAGAAAAAAGGAAAATGCATTTAGTTTTTGAATACTGTGATCATACACTTTTAAATGAG 275
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 ATCG-AGGTGTTCAGGAG-AAAAAGGAAAATGCATTTAGTTTTTGAATACTGTGATCATACACTTTTAAATGAG 439
Query 276 CTGGAAAGAAACCCAAATGGAGTTGCTGATGGAGTGATCAAAAGCGTATTATGGCAAACACTTCAAGCTCTTAA 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 CTGGAAAGAAACCCAAATGGAGTTGCTGATGGAGTGATCAAAAGCGTATTATGGCAAACACTTCAAGCTCTTAA 513
Query 350 TTTCTGTCATATACATAACTGTATTCACAGAGATATAAAACCTGAAAATATTCTAATAACTAAGCAAGGAATAA 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 TTTCTGTCATATACATAACTGTATTCACAGAGATATAAAACCTGAAAATATTCTAATAACTAAGCAAGGAATAA 587
Query 424 TCAAGATTTGTGACTTCGGGTTTGCACAAATTCTGA-------------------------------------- 459
||||||||||||||||||||||||||||||||||||
Sbjct 588 TCAAGATTTGTGACTTCGGGTTTGCACAAATTCTGAGTTGGACTTCATCTTTCTCTGGTGCCTCCTTGATTGGC 661
Query 460 -----------------------------------------------------------------------TTC 462
|||
Sbjct 662 TTAATAGTTGACCTTCTGAATTCTTTTTCTGCCAATTCAGAGATTTTTCTCCTGGCTTGGATCCATTGCTGTTC 735
Query 463 CAGGAGATGCCTACACCGATTATGTAGCTACGAGATGGTACCGAGCTCCTGAACTTCTTGTGGGAGATACTCAG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 CAGGAGATGCCTACACCGATTATGTAGCTACGAGATGGTACCGAGCTCCTGAACTTCTTGTGGGAGATACTCAG 809
Query 537 TATGGTTCTTCAGTCGATATATGGGCTATTGGTTGTGTTTTTGCAGAGCTCCTGACAGGCCAGCCACTGTGGCC 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 TATGGTTCTTCAGTCGATATATGGGCTATTGGTTGTGTTTTTGCAGAGCTCCTGACAGGCCAGCCACTGTGGCC 883
Query 611 TGGAAAATCAGATGTGGACCAACTTTATCTGATAATCAGAACACTAGGAAAATTAATCCCAAGACATCAATCAA 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 TGGAAAATCAGATGTGGACCAACTTTATCTGATAATCAGAACACTAGGAAAATTAATCCCAAGACATCAATCAA 957
Query 685 TCTTTAAAAGTAACGGGTTTTTCCATGGCATCAGTATACCTGAGCCAGAAGACATGGAAACTCTTGAGGAAAAG 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TCTTTAAAAGTAACGGGTTTTTCCATGGCATCAGTATACCTGAGCCAGAAGACATGGAAACTCTTGAGGAAAAG 1031
Query 759 TTCTCAGATGTTCATCCTGTGGCTTCTGAACTTCATGAANGGNTGTCTGAAGATGAATCCAGATGACAGATTAA 832
||||||||||||||||||||||| |||||||||||||||.||.|||||||||||||||||||||||||||||||
Sbjct 1032 TTCTCAGATGTTCATCCTGTGGC-TCTGAACTTCATGAAGGGGTGTCTGAAGATGAATCCAGATGACAGATTAA 1104
Query 833 CCTGTTCCCAACTCCTGGAGAGCTCCTACTTTGATTCTTTTCAAGAGGCCCAAATTAAAAGAAAAGCACGTAAT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 CCTGTTCCCAACTCCTGGAGAGCTCCTACTTTGATTCTTTTCAAGAGGCCCAAATTAAAAGAAAAGCACGTAAT 1178
Query 907 GAAGGAAGAAACAGAAGACGCCAACAGGT---------------------------------ACTTCCGC---- 943
|||||||||||||||||||||||||||.| ||.|||||
Sbjct 1179 GAAGGAAGAAACAGAAGACGCCAACAGATGGAGTTTCAATGGCGCTATCTCAGCTCACTGCAACCTCCGCCTCC 1252
Query 944 -----TCAAAAGT------------------------------------------------------------- 951
|| ||||
Sbjct 1253 TGGGTTC--AAGTGATTCTCCTGCCTCAGCCTACTAAGTAGCTGAGATTACAGATATGAGCCACCACACCCAGC 1324
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1325 TAATTTTGTATTTTTAATATAGATGGGGTTTCACCATGTTGACCAGGCTGGTCTTGAACTCCTGACCTTGGGTG 1398
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1399 ATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATAAGCCACCGCGCCTGGCCTGGCTCAGTCAAC 1472
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1473 TTTTAATTTACCCCAAAATTTGCTTAAGCTGAGAATTGGTAATCCTACTCAACAGGCATATAAATGATTTGTAT 1546
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1547 TTTTAAAGTTAAAATTTTTCTTTCTGTTATGAACACTACTCATTGACCATATGTCTAAATATTGTCATATTGAA 1620
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1621 GATTCTGTGTGTCCATTTATTATTTTAGCACATATTTGTGTAGAAGCAGGTATATTTCAAATCACTTGAAGTCG 1694
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1695 TAGCTATATGTTAGTTAACATTGATAATTAGCCTAATCGTAATTTAAACTACTAGAAACAATTCACTAAAAGCA 1768
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1769 ATTTTAGTTTTATTATGTTAAATATACATAATATTATGGTTTTTAAAAATTTAGCTTAAGATACTTTGAAAACC 1842
Query 952 -------------------------- 951
Sbjct 1843 CACATATGAGATTAAATATTTTGGTG 1868
