Construct: ORF ccsbBroadEn_15308
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018818.1_s300c1, BRDN0000458114
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CDKL4 (344387)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 344387 | CDKL4 | cyclin dependent kinase like 4 | NM_001009565.2 | 99% | 21.2% | (many diffs) |
| 2 | human | 344387 | CDKL4 | cyclin dependent kinase like 4 | XM_011532816.2 | 90.5% | 19.5% | (many diffs) |
| 3 | human | 344387 | CDKL4 | cyclin dependent kinase like 4 | XM_017003981.2 | 90.5% | 19.5% | (many diffs) |
| 4 | human | 344387 | CDKL4 | cyclin dependent kinase like 4 | XM_017003982.1 | 90.5% | 19.5% | (many diffs) |
| 5 | human | 344387 | CDKL4 | cyclin dependent kinase like 4 | NM_001346911.1 | 82.2% | 17.6% | (many diffs) |
| 6 | human | 344387 | CDKL4 | cyclin dependent kinase like 4 | XM_011532815.3 | 82.2% | 17.6% | (many diffs) |
| 7 | human | 344387 | CDKL4 | cyclin dependent kinase like 4 | XM_011532817.2 | 78.6% | 22.1% | (many diffs) |
| 8 | human | 344387 | CDKL4 | cyclin dependent kinase like 4 | XM_011532819.2 | 57.7% | 33.6% | (many diffs) |
| 9 | human | 344387 | CDKL4 | cyclin dependent kinase like 4 | NR_144520.1 | 54.2% | (many diffs) | |
| 10 | human | 344387 | CDKL4 | cyclin dependent kinase like 4 | XM_017003984.1 | 53.2% | 35.6% | (many diffs) |
| 11 | human | 344387 | CDKL4 | cyclin dependent kinase like 4 | XM_017003985.1 | 53.1% | 38% | (many diffs) |
| 12 | human | 344387 | CDKL4 | cyclin dependent kinase like 4 | NR_144521.1 | 50% | (many diffs) | |
| 13 | human | 344387 | CDKL4 | cyclin dependent kinase like 4 | XR_001738736.1 | 29.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 335
- ORF length:
- 237
- Sequence:
-
1 ATGGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG GAAAAGTATG AAAAATTAGC 121 TAAGACTGGA GAAGGGTCTT ATGGGGTTGT ATTCAAATGC AGAAACAAAA CCTCTGGACA 181 AGTAGTAGCT GTTAAAAAAT TTGTGGAATC TGAAGATGAT CCTGTTGTTA AGAAAATAGC 241 ACTAAGAGAA ATACGTATGT TGAAGCAAAT TAAAACAATN CCAAATCTTG TGAACCTCAT 301 CGAAGGTGTT CAGGAGAAAA AAGGAAAATG CATTTAGTTT TTGAATACTG TGATCATACA 361 CTTTTAAATG AGCTGGAAAG AAACCCAAAT GGAGTTGCTG ATGGAGTGAT CAAAAGCGTA 421 TTATGGCAAA CACTTCAAGC TCTTAATTTC TGTCATATAC ATAACTGTAT TCACAGAGAT 481 ATAAAACCTG AAAATATTCT AATAACTAAG CAAGGAATAA TCAAGATTTG TGACTTCGGG 541 TTTGCACAAA TTCTGATTCC AGGAGATGCC TACACCGATT ATGTAGCTAC GAGATGGTAC 601 CGAGCTCCTG AACTTCTTGT GGGAGATACT CAGTATGGTT CTTCAGTCGA TATATGGGCT 661 ATTGGTTGTG TTTTTGCAGA GCTCCTGACA GGCCAGCCAC TGTGGCCTGG AAAATCAGAT 721 GTGGACCAAC TTTATCTGAT AATCAGAACA CTAGGAAAAT TAATCCCAAG ACATCAATCA 781 ATCTTTAAAA GTAACGGGTT TTTCCATGGC ATCAGTATAC CTGAGCCAGA AGACATGGAA 841 ACTCTTGAGG AAAAGTTCTC AGATGTTCAT CCTGTGGCTT CTGAACTTCA TGAANGGNTG 901 TCTGAAGATG AATCCAGATG ACAGATTAAC CTGTTCCCAA CTCCTGGAGA GCTCCTACTT 961 TGATTCTTTT CAAGAGGCCC AAATTAAAAG AAAAGCACGT AATGAAGGAA GAAACAGAAG 1021 ACGCCAACAG GTACTTCCGC TCAAAAGTTT GCCAACTTTC TTGTACAAAG TTGGCATTAT 1081 AAGAAAGCAT TGCTTATCAA TTTGTTGCAA CGAACAGGTC ACTATCAGTC AAAATAAAAT 1141 CATTATTGCC ATCCAGCTGA TTC