Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_15487
Subject:
NR_003654.2
Aligned Length:
3956
Identities:
161
Gaps:
3775

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TCCGGTGCTCAGTGGCTAGCCGAATAGCCGTGTTTGGGACCTGGGCTCGGGCTTCTTGCGTCCCCGCTAAGAAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATGTCACGGGGCCGAATCGTCCGTATTCTCTCAGCTTCAAGCTCCTCTACTTTTCAACCAGGTCACTAGCCCTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GACTCCTCTTATCAAACTTCCGGAACTGCCACCCCACCAGTGACTCCACAGGCACCAGGGCATGCAACAGGGCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGGACAGGAAGGCTCTCTTCTTCACCTCAAGCCTGCTGGGCTAACACTTGCGATTTTTACTAGAGTTAACTTTG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TAATGTATGTCTCTGACTCTAGAATTTCAAGAGAAGTTCCACTTAGTGACTCCTAAGTGGAAGTTCTAAGATGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTTCCCAGTGAGGTGATGAAGAGGTTTGAGCTTTAGAGTGCGGTTGCAAAGCTCTTCTCTGACCTGAACAATGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTGTAGCTGTGGACCAACAAATCCAGACTCCTTCAGTACAAGATCTCCAAATAGTTAAACTGGAAGAAGATTCC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CACTGGGAGCAGGAAATTTCCCTTCAAGGGAATTACCCTGGACCAGAGACATCCTGCCAGAGCTTTTGGCATTT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCGTTACCAAGAAGCATCACGACCCCGAGAGGCCCTCCTCCAGCTCCAGAAGCTCTGTTGTCAGTGGCTAAGGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CAGAGAAGTGTACAAAAGAGCAGATCCTGGAGTTGCTGGTCCTAGAACAGTTCCCGACTGTCCTTCTCCAGGAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ATCCAGATCTGGGTCAGACAGCAGCATCCGGAGAGTGGAGAGGAGGCAGTGGCCCTGGTGGAAGACTTGCAGAA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGAACCTGGAAGACAGAGGCTGGAGCCCTGCCTGATGTGGCTCTGGGAATTCCTGCAGAGAAGAGCAGGGGTGG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCAGGAGATAGTGAGCAGCTCCCAGGAGGCATGGAGGGATCCAGAACCTGGACTGAAGAACCACCTAGAAATAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CTCAGCAGAATTCTGAAAATGAGGTCACGCTGGATTTTCCAATCCATAGGCCCAAAGTGAACTCCCACGTGGAG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TAGGATGAAAACCCACAGCATCTAGATCTTCAAATTCTGGAGAAAAAGAGAGTGTGAAAGACTGCTCAGTGGCT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GGGGTGAGAGTCAAGTCTGGCCAGGTGCTAATCTGGAGAAAAGCCAAGACCTGGAGCGAGCTGGAGTGGCAGGC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CCTGGAGGATGAGAAGGTGGCAGGAGTGCACTGGGGATACAAAGAAACCAAGATTTTTCTGGGAATTCTCAGAG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GCCTGGATCCACGAAAAACTCCGCACCTGCCATCGAAACCACCAGGTGTACCGGATTATGGCTGAGCAGCTGTG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGAACATGGCTTCCTGTGGACCCTGGAGCAATGTTGCTATCGGTTCAAAAACCTCCTGACCGACTACTGCAAAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CCAGGAGCACCTACACACCAGGCACCAGTGTCTTCTATGATGAGATGGATGCCCTGTTGAGTCTTGGGGCACTT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TCTAACACCTTTGATGCCTTAGAGGTGGTAGGAGGCCTTCTTTGGGATTGAGAGGATTCCAAAGGGAACCAGGG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CATAGCACTAGAAGATGTGGCGGGATGGTAATGAAATAGTGGAGGAGTCTCAAGAGGAATCCTGGAGGCTTGGT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CCCCAGGCCTTGAGGTGGAATCCCAGTGGCAACTCTCCCCCACAATGGACCTCAGAGCAGTGGGAGCGACGCAG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TCCTGTGGGAAGCATTCAGGCTCAGAATCAGGAGATGTGATTATTGTCCTGGCTCTGTTATGACTAATTTGGGT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CTGGAATGGCCTCATCGGGGGAAAAATTGGTGACAACTTTAAGAAATACTGTTTATATCCCGTCCTCAAATATT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GCTTGACTCAACCCTCTACTGAACCAGTAGTCCAGGGTGGCTCACAAAGACCACTTTGAGGCTCTTGCTCTGCT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CTTTAGCCAAGGAGTCTCCCTTCCTGCCTTCAGTAACAACATTACAGGAAGAGAGGAGAGAAAGGTAGGAGTTA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  AAGATCCAGTCATTTGTTTCCATCTAAAGTGCCCTATAAGCCGGGCATGGTGGCGCAAGCCTGTAGTCCCAGCT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ACTCGGGAGGCTGGGGCAGGAGAATCACTTGAGCCCAGGAGTTGGAGGCCGCAGTGAGCTGTGATCATGCCACT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GCATTCCAGCCTGGGCGACAGAGTGAGACCCAGACTCAGCTGAAAAATAATAATATTATTAAAAGAATTTAAAA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TAAAGTGTTCCATAGATGTGAACCCTGCGTAGATTATACACACCAGTCTGCCATTTAAAAGGTTTGTTGTTCTT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GGGCAACCTCTTTAAATACCCTTAGCCTCCATTTTCTCATCTGGACAGTGGACATTGTGATGGTTTCTACCTCC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CTGGGCTGTTATGAGGATCCTGACACAGTATTAGCACTTGGCAAACGTTAGTTTTCATTATCATCATCATTATA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  ATTATTATGAAAATAGATAAGGGCATTATCCTGTACCCTCAAAGGAGTAAAAGGGGGAAAATGAGTCATTAAAC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TTTCTCTTCTGGGAACTAGACCTTCTTGAGAGGCACTATCATTCTCATTTCACCTGTCACTTCCAGACATGGGA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GCAGAAAGTGAATTTCAGAACTCCATGTCCCCTCCTGCTTTTCTCTGAGCAGGACTTCCAGTTCCCCAGCCAGA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TGGGGTCACAATGCTGCAGAAAAGTGAAGAGCTTTGGAATGAAGATCTCCCGGACTTCAAGGAGATTCAGAAAA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  CGTCCAGTGCAGGTGGGAAATGAATGGGAGCTAGCATTCCACCAACAAAGTCAGCCCTGGGATTCTAAACTCGG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ACAAGCCAGCACTGGTTAAGGGCTGAGGGGAACCAGGCACTCAGTGCACCCAGTTTACTATTCTGTGGTGTGGA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  AAGCACAGGACTTGAGAAGCAGGTGGCACCCAGGAAAGCCTGTTCCCCTAAGTAAGTTTGAACTTTAGTTACTT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  GAAAAAAGGTATAACTGAATTATGAGTGTTTATGATTTTATCTTTATTTTATTTTTTTTGAGATGGAGTCTCAC  3034

Query    1  ------------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGTTCAAGCGATT  56
                              ||||||||||.|.|||||.|.||||||||.||||.|.|||.|||||||||||.|||
Sbjct 3035  CCTGTCACCCAGGCTGGAATGCAGTGGCACAATCTCGGTTCACTGCAGCCTCTACCTCTCAGGTTCAAGCAATT  3108

Query   57  CTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACACTCA--------ACTAATTTTTG  122
            |||.||||||..||||||||||||..||||||||||  |||||||||.||   ||        .|||||||||.
Sbjct 3109  CTCCTGCCTCACCCTCCTGAGTAGTGGGGATTACAG--GTGTGCCACCAC---CATGCCCGTCTCTAATTTTTA  3177

Query  123  TATTTTTAGGAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG----------  186
            |||||||||.|||||||||||||||||.||||||||||||||||||.|||||||||||||||||          
Sbjct 3178  TATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCC  3251

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3252  ACCTTGGCCCCCCACAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCTGGTCTATCTTTAAATTCCTATCT  3325

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3326  GAATTTGTTTAGGTTTTTTAAATAAAAATCTTTCTTTTTTTTTAGAGACAGGGGTTCACCATGGTGCCCAGGCT  3399

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3400  GATCTCGAACTCCTCCTGGACTCAAGCTATCCTCCCACCTCAGCCTCCCAAAGTACTGGGATTACAGACATGAG  3473

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3474  CCACATGCTTGACCTGAATTTTAACTGCAGTTAATTATCACTTAACCAGCGAATTCACACAGGAGAAATCCCCT  3547

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3548  GGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCTCTTCGGGAGGCCGAGGTGGGTAGATCACAAGGTCAAGA  3621

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3622  GATCAAGACCATTCTGGCCAACATGGTGAAACTCCGTCTGTACCAAAAATACAAAAATTACCTGGGCATGGTGG  3695

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3696  TACGTGCCTGTAATCCCAGCTACTTGGCAGGCTGAGGCAGGAGCATTGCTTGAACCCATGAGGTGGAGGTTGCA  3769

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3770  GTGAGCCGAGATCACGCCACTGCACTCAAGCCTGGGTGACAGAGCAAGACTCCATCTCTACTACAAAAAAAAAA  3843

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3844  AAAAAAAAAATTCAACCACCTTAGGAAGCCTCTCATTTATGTATTTCTAGCATGTAATTAGTGTTGCACATGGG  3917

Query  187  ----------------------------------  186
                                              
Sbjct 3918  AAGGGCTAATAGATGCTGACAGAGTGAACAACTT  3951

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