Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15487
- Subject:
- NR_033710.1
- Aligned Length:
- 5945
- Identities:
- 164
- Gaps:
- 5759
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTGTTGCGGGATCTCACAGGCTTTAAACCGCGGCGCCGCGGCGCCCGGGTGTGGATCCCTAGATGGGAGCCGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGATGGGCCGGGTGCCTGGTGGGTGGCAGTCGGGGCTGACGGCGGCGGCACTTTGCCGCCTCAGGCCCTGGACA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCTTCACCCCGCCGCCTGCCCAGGCGGGCCGGCCCTGCCCGTCCACCGGCCGCCGAGAGTCCCCGGCCTTGGGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCCCGGGGCCGCTGACTGGCCTCGGTCACCTCCCGGGGAAGGCTCCCGCGCCTCCATCTGCCCCCGCAGGAAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GACCCTCTTCTCGCCCGCGAGGCTTCTCCGGGTGGGATCGTCCTGGCCCCCAGCCCTAAGGGATCCGCCCCCTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CGAGCATCCGCCGCCCCTCGGAGACCACTCCAGCTCGGACGGACCCACTCCAGCCCCCGCTGCACGCGGAAGCG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTCATCCTCCCCGCCTGCCCCGTTCCCTCCCCCTTCTCCTGTGGGACAACCAGGGACCGCAGCTCCCCGCTCCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CAGGTGTGGGGGCTCCGACACGAACGCCTCTGCTCGCAGGGCGGTGAGCGCAGATCCCACGGGTCCCTCGGTCG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGGGTCGAGGCTGCTTCCGTTTCCATCCCGGACCCGACAATGGGCGGGAAAAAGAAGGCTTTACACGACTACGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GGCGGAGTTCACCGACCTGGTGGTGAAGCACCTGATTGAGCACAGTGACTCTGGGGACACGTCTGTGGTGGAGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCCTTTACTGCAGGGCCTGCGAGCTGCCCGTGCGCGTGCGGAGGGACCGCATCCTGGAACACCTGTCCTCGGGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGGCAGCACGGCCTGCGGACGCCCATTCTCATGTAAATGTCAGTGCCAACGCTGGTGTTTCAGGAGTCATCCCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GCGGGCTGCGGGCTATTTTAGGATTCTCTGCCCTGCAAACGTTTCCAAAGTACGTGGACAGGCCGCCTGATGAC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ACTACGTTTACGGGATCTGCTAGTGGCTTGCCTACTTAGGGAGTAAACCCTGTGAAGTCTCGCAGTTTTGTTAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGTGTGCGTGGCCACCTGAATGCTGCCTTATCACAAGCCAGATACATACTGGTCTGTAGGGTAACTCCCCACTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTGATCCTCTGAGATGATTGTGGACTGGGTGCTGTGAGTCCTGCCACTTTGTTTAAGTGAATGTGTCTTTTGTC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CAGCTCAGCCGCCTCGGATCTCGCTGCCACCAGCCTTACTGCACACCCGTGCCACCCGCCCTTGCCCCGTCAGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTCAGCCTCAGCTCATTCTCTCAGGCAGTCCCAGCATTGGCACGGTACCTCCTCCCGCTGTGGGCCACACGTCT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTGCTCCCTGTCAACCCTCCTGCCATCAGCACCACCACCAGCGACTTGTCTGCCCGGGAGGATGCAACACCATC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TGCCTCCACCGGCCACCTTTCAGTGTTTCCTGCTTTCCAAGTAAAGATACCAGCAGTGCCCTCAGAGCAGACCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCCAGAGTTTTTCTGAAGCCTCCCACAGGGTGCTCCCCGGAGGAGGCCCGAGATGCTCTCGTGACTTTGGAGCC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGGGTGGCTGGCCACCTTGGCCTGGGCATCTTTGGGGTGGGCTTCGGGAGCCCGGCACTGCTGCAGAGTGTGGT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GGATGAGAACAGCTGCTGCTTGCTGTACGTGGTGGAGGACCAGCTGTGTGATGTGGAGCAAGCCTTCAGAGCTG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGCATTTGGGCCAACACCAGAGTGGTTCGGGAACAGGATGCAGACATTGTCCTCAACGACCAGCGGCACTTTGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TCCGGTTTTCCAGTTCTTGCACAAGCAAGTTTGTGTCAGCCACGCCCTGGGGAGGATCCACTGGATCACCGCCG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TCACTGCCTGTTCCCGGCGGCCTCTCCGGCTTCCCTAAAGAGAGCAGGTGGGACTTTCTACAACGCTGCTGTGC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ACGACGTGGATGCCGTATGCATGTTGCTGGGGGAAGCCACTCCGGACACTGTGTTTTCTCTGGGACATGTCTTC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGCCCAGATATGGCCGCCTTAAAAGATGCAGATGCTGTTGTGATCAGCATGAAGTTTCCCTGTGAGGCCGTGGT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TAGCGTGGACATCAGCCAGCACTGCACAGACAGCTGCGACCAGGACGTCAGCCAGCACTGCACAGACAGCTGCG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ACCAGAGACTGGAGGTGACCCTTGCCCTTTTCCACCCTTCGCCAGTCCACTGTGAAAAGCTGGGTTGATTGTGC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GGGTTAGATAGAGGTCATCAGCCGGGTTGATTGTGTGGGTTAGACAGAGGTCATCAGCCAGGTTGATTGTGTGG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GTTAGATAGAGATCATCAGCCTGGTAGATTGTGTGGGTTAGATAGAGGTCATCAGCCAGGTTGATTGTGCGGGT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TAGATAGAGATCATCAGCCGGGTTGATTCTACAGGTTAGATAGAGGTCGTCAGCCGGGTTGATTGTGCGGGTTA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GATAGAGATCATCAGCCGGGTTGATTGTGCGGGTTAGATAGAGGTCATCAGCTGGGTTGATTGTGTGGGTTAGA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TAGAGATCATCAGCTGGGTTGATTGTGTGGGTTAGATAGAGGTCATCAGCTGGGTTGATTGTGTGGGTTAGATA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GAGGTCATCAGCTGGGTTGATTGTATGGGTTAGATAGAGGTCATCAGCTGGGTTGATTGTACGGGTTAGATAGA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GGTCGTCAGCCGGGTTGATTCCGCAGGTTAGATAGAGGTCGTTAGCTGGGTGTGTGGGTCCCAAGGCGTGCTGC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AGATGGAGAATCAGAATTCCTTGGGCATCACCGGGCGGGGCATGTCCCTGTCCCTTCGCTCCCAGACCCAGGCT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AGCCGCTACCAGGACTCCTATCGAGAGCTCTTCAGACACTTTGTCAGAACCCTTAAAGGTGGGTGACGTTTTCA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GGAGGAACCTGGGATGTCCTGATGCTCAATGGGTAGATGCCTTCCAGGCTGCAGTCAGTGCAGATGATATGCCA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 ATTTCAGGTGGAAAATTGCATTCCAGATACCGGGTTCAGATTTGAAATTGTCCATCTCAGTGATCATTTACGTT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GCGTGTACTTGAGGGAGATTCTGAGAGATGCTCCTTTGGGGTTCTGTGCGTGTACCATGTTGCCTGACACGTCC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TGAGAAATCTTCTTAAACTCTGAGTTTATAAAATAACTACTTCTGAACTCCTGAGATCTAGTGGATACCATGTA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TCCTGGAAGATAGGACACTTTCTACCCTCTGTCAGTCCTGGGGGTGACTGGGAACCAGAGAGGTTGAGCAGAAT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TCCTGGACCTGGGTGGGGCTTGTCCAAGAGGGGCAGGTGGGCCTCTCTAGGATCAGTGTCCCACCCAGAGGCCA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GTGGCCCCTTCACATGCCCCAACAAGAGGAAGACTGTCTGGCTCCGCAGTGTTGGGTTTTGTCCTGAATCTGTG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CAAATGTGCAGGGAAATAACCTCCTGAAATCACCAAAGAGCAGTTCCTCAGGGCCTTCCGGGTGACCGTGGCCG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TGGAGCAGTCGTGGTGAAACCGGTCAGCTGTGGACCTGCCCTGCGAATCGGCAGAGGCCTCCGTGGTGAAGACA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GAAGCTCCGTGAACCAACTCGAGGCTGGAGCCAAGATCCTGCCTGATATCCAGTTGCCTGTTTCACTTGTTACT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 GTTACTGGGAGAGGGAGACAAAACCTCATGGCAATCTTGTCCTCACTGGAGACTCAGAAGGGGAAGCATTGGGA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 AACCATGTATGTTTCATTTCTGGTTTAACCAGGCTTTTCAGGATGGGACTTCAGACCAAGGACACAAGTTGGGC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TTGCTTAGGTGTTTTGTGTTGTGCGCAGGCCTCAGAGATGCTCTTCCGGTCAGAGTTCCCTTGGCAGGGCCTTG 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 GAGGCCTCTGGTTGGCTCTCTCAGGAAGAGGGCAGGTCAGGGATTGGGCGGTGTAAATTGACTCAGAAACCTGC 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 GGTTTCAGCTTTTCTGTGGCAAACAGGGCCGAGGGCTGGTGAAGCTGTTAAGGCTAAATGTCGCATGCATGAGG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 CGGGCTGCAGGCCTCCTTAGGCCTTTTTTGGGGTAATTACACCAGTATTTAAAAACATTTTTTTTTGTTTGTTT 4070
Query 1 ----------------------------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTC 40
.||||.|||.||.|||||.||||||||||||||||.||||
Sbjct 4071 TGAGATGGAGTCTTGCCCTGTCACCCAGGCTGGAGTGCAATGGTGCGATCTCGGCTCACTGCAACCTCCGTCTC 4144
Query 41 CCAGGTTCAAGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACACTCAACT 114
||||||||||||||||||..||||||.||||.|||||||||||||||||||.|||||||||||.||.|||..||
Sbjct 4145 CCAGGTTCAAGCGATTCTTCTGCCTCAGCCTTCTGAGTAGCTGGGATTACACGCGTGTGCCACCACGCTCGGCT 4218
Query 115 AATTTTTGTATTTTTAGGAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG-- 186
|||||||||||||||||.|||||.|||.|||||||.||||||||||||||||||||||||.||||||||..|
Sbjct 4219 AATTTTTGTATTTTTAGTAGAGATGGGATTTCACCATGTTGGCCAGGCTGGTCTCGAACTACTGACCTCGTGAT 4292
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4293 CCACCTGCCATGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCTCGGCCTAAAAAACAATTTTC 4366
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4367 TTGAAGAATCCGATTTTGTGCATAGTAATGACACAGCACCATTCCTGAGAAATAGGAAATATATGTGTGTGGTA 4440
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4441 TGAAAAGCCCATATTCTGTTCTTGTCACCTGAATCTAGGCTTCCTCTTTGGATGTGAACGCGGGAATGAACAGT 4514
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4515 GGCTGTTTTCCACCCAAAGGGGCGTGGAGACCTTTTGGAAACGGGCTTTCTCCTTTCCATTTTGCAGCCGGGGG 4588
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4589 CGGGTGGAAACCTTCCTTCGAAGGGTAGTGCCTTGGGGAGCAGCAGACCTGCTCTGAGTCCAGCTTAGCTTTCC 4662
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4663 AAAATTCTGTGTGGAACTTACTGGAGATGTTTTTATATATTTGAAAATAATGGCCTGTATTTCTCACGCTATAC 4736
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4737 TTAAAAAAAATAACTAACCTTTTAAACAAAGATATTCAAACTCACCCTTGTGCTGAAAGCACTCACATTTCTGT 4810
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4811 GTTCATTCCTGAAAGGGCGTTTTAGAGTCCCCGTTTCTACGTTCTATGTGGCACCCTCTTGCCGAGGGAACATC 4884
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4885 CAGAATCCCTCCACTTCCTGTCTAGTTTGAGGCCTCAACACCTTCATGATCCAGAGTCCTGCGGCTATGAGGGG 4958
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4959 GTGGGCCCACCACCGCCCAGCCCTCCTTGGTGGACGTGGGGACAGGTAGGAGCCTAGGGAAAGGGGTGGGCGGG 5032
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5033 CTCTGGTGTGACGGCGTGAGCGCTAGCCAGGAAGATGGGGCCAGGGCTTGGCATGGCACCTCACCTGTGGGGGA 5106
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5107 ACTCGGCGGAGCTTCCTGGCGGCATCTCCCCCTCTTGCCTTGGTCCTTTCTATCTTTGTTTTAGGCCAATTTCT 5180
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5181 AAAAAGACTGAGGCCTCCTTCAAGGTTGAACAGATTTCTAGAGCCTTGTTTTTGCTGTGACAAGTCCCTAGTCC 5254
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5255 CTGTTCACAACTCTGAAACCAAGAAACCTGAGAACCAAGAGAACTGAAATGAAGCCCGTTGGTCTCAGCCTGGC 5328
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5329 TTGAGCCAACATGAGGCTCTCTGCTGCCTTTTGTTTTCTTAGGTTTTGCTGAGAAACGGGAGTGCGTTCTGTGT 5402
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5403 CGGTGTTTGTGACGCCCTGAGACCCTGCTTGGCCTAGCTAAAGTCCAGAAGGCCTGGGCCCCACAGGGCTTGGA 5476
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5477 TGAGGGCTCATGGGCCTGTACTTCAGGAGGCCTGAGAGGCCCGGTCAGTCCCATGAGGCTACTCGGCTTGGCCC 5550
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5551 GCAGGTCCTCCGAGGCACAGGGCAGAGGGACACCCCAGGGACCCATCAGACTCACGACACAGAGAAACTCAAGT 5624
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5625 GGGGTGCCAGGGCCGGCCACAGAGGCCACGGGCTTCCTGCCTGTGAGGAGCCGCCCTGTTTGTCTGAGCCCTTT 5698
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5699 GGAGATTTAGGTTGAGTCATGAGAACCGGTCATTGGAACATACACTTTATTATGTTACAAAAACAAAAATCCCC 5772
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5773 ACTGAAACACAGCTAAAAAAATAACACATTTTCCCAAGATTACATTACCAAAAACAGTTGTTATGTCATTGGAG 5846
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5847 GGCGTCCATTAATACTGCTCGGAGAAGCACGATCTTACACGAAAAACACGGATGGGATTTCGTTTTCACCTTAA 5920
Query 187 ------------------------- 186
Sbjct 5921 AGCATTAAAGTGCTTTAACTGGTAA 5945
