Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_15487
Subject:
NR_135912.2
Aligned Length:
4361
Identities:
160
Gaps:
4178

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTCATTCGAGGTCCGGGTCCGGCTTGCGGGGTCAGCGAACTGGAGAGGCGCCATGGGCTGGAGTAAGCCCCCCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCACCTTCCGTCCTCGATCGTTCCCCTTGTGGAAGTAGTCCCGGGTCTCGTGGGATCCTCGCCGCCCGCTCCCG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCTGCGCTGTCGGTTCCCCCGCGCCTGGGCGGACCCTAACCCCACCCGGCCCTCCGCACCGCAGCCCCGGCTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CACCAGGTCCTCTGCAGACTGGCCGGACAGCCTGGCCTTTTCCAGCTCAGGTTCCTAATCTGTAAAATGGGCGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGCCGTGGGAAGGGGAGGAAGAGGCAGAAAGGCACTGGACTCCAGGAAAGGGGTCGGGGAACGTGCAGGGGTTT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGGCGCCAGACACACCACGTTCCGGCCAAGTGGCTCCTTACTGGCTGTGAACGTGGGCCAGTCACTGTCTCCAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCCGCAATCTTCGGACTCATTCCGGAAGGCAGTGTAGCCTAATGGTGGAGGGTTCCGACTCTGGAGCCAGGGTT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAAGTCCTCCCTCTTCCTGTGACTTTGAGCGAGTGACTTCACCCCTTGGGCCTCAGCTTCTTCATCTCCAAAAT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AATGGCAATCATACTACTGTTTTAGACACAGTAAGTGTTATAAACGTGTTTTTGTTTGTTTGTTTGAGACAAGA  666

Query    1  -------------------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGTTCA  49
                                     .|||||.|||||.|||||.||.|||||||.|||||..|||||.||||||
Sbjct  667  GTTTTGCTCTGTCGCCCAGGCTGGAGTGCAGCGGCGCGATCTCGGCCCACTGCAGCCTCCGCCTCCCGGGTTCA  740

Query   50  AGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACACTCAA--CTAATTTTT  121
            |||.||||||.||||||.|||.|||||||||||||||||||| |||||..||||  |||.|.|  |||||||||
Sbjct  741  AGCAATTCTCCTGCCTCAGCCACCTGAGTAGCTGGGATTACA-GCGTGCACCAC--CACGCCAGGCTAATTTTT  811

Query  122  GTATTTTTAGGAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG---------  186
            |||||.||||.|||||||||||||..||.||||||||||||||||||||||||||||||||||.|         
Sbjct  812  GTATTCTTAGTAGAGACGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCC  885

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct  886  CGCCTCGGCCTCTCAAAGTGCTGCGATTACAGGCGTGAGCCACTGCGCCCGGTAGTAAACGTGTTTCTTTAAGA  959

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct  960  ATATACTAACAAACTGCAAGGTGATGCGGTCACAGAAGATCTTATTAGACGGAATGCTGAACACAACGACTGTG  1033

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1034  TCATTTTTTCCCTGGAGGAACTCTCGTTGCATCAGCAAGAAATAGAAAGACTAGAACACATTGATAAATGGTGC  1107

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1108  CGGGATTTAAAAATTCTCTATCTTCAAAATAATCTTATTGGGAAAATTGAAAATGTTAGCAAACTCAAGAAACT  1181

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1182  TGAATATTTGAATTTAGCTTTAAACAACATTGAAAAAATAGAAAACTTGGAAGATGTCATCTATTGACTTCCTG  1255

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1256  ATGTGGACGATGCAGATTTTGTTCTCTCACACCATCTGCAAGGTTCTCAATTTTCTCCTACCCACCCTCCGTGT  1329

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1330  ATTTTCATATGACATTGACAGGATATCATAATGAAATATGGCATACGGACCCATTTACGGGGACTGGTCTTTTG  1403

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1404  AATTAACTGTGTTGGGAGAGGATATTACACTTGCTCCCCAACTCTCCCACATCTAATCTCTGGCCTTTCTTATC  1477

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1478  CTACCTGCCTCCTCCTGCCTTCTTCCAAGCTGGTCTCTCCATCTCCACCTGTGTCATGAATTCCAGGCAGGATG  1551

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1552  TGAAGAGCTGGCAAAACTTGACCTGACTGTGAATTTCATTGGAGAGCTGAGCAGCATTAAAAACTTGCAGCACA  1625

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1626  ATATCCATCTGAAGGAGCTCTTTCTCATGGGGAACCCATGTGCTTCCTTTGACCACTATAGGGAGTTCGTGGTA  1699

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1700  GCAACTCTTCCACAATTAAAGTTCCTCTTTAGAGAGCAAAGACCACCTACAGGCACCAGACACAGAGGAACACA  1773

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1774  ACACAAAGAAATTAGACAACAGTGAAGATGACTTGGAATTCTGGAATAAGCCCTGTTTGTTTACTCCTGAATCA  1847

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1848  AGATTGGAAACTCTTAGACACATGGAAAAACAACGGAAGAAACAGGAAAAATTAAGTGAAAAAAAGAAGAAAGT  1921

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1922  GAAACCACCCAGGACTTTGATCACTGAAGATGGGAAAGCCCTAAATGTGAATGAGCCCAAAATTGACTTCTCTT  1995

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1996  TGAAAGATAACGAAAAGCAGATCATCCTGGACCTTGCTGTCTATAGGTATATGGATACCTCTTTAATCGATGTT  2069

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2070  GATGTGCAACCAACTTACGTGCGAGTAATGATCAAAGGAAAGCCATTTCAGCTTGTCCTTCCTGCAGAAGTGAA  2143

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2144  ACCCGATAGTAGTTCTGCTAAAAGATCTCAGACAACGGGTCATTTGGTCATCTGCATGCCCAAGGTAGGAGAAG  2217

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2218  TAATCACAGGTGGTCAGCGAGCATTCAAATCTATGAAAACTACCTCGGACAGGAGCAGAGAACAAACAAATACA  2291

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2292  AGAAGCAAGCACATGGAGAAACTAGAAGTAGACCCTAGCAAGCACTCATTCCCTGATGTGACTAACATAGTTCA  2365

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2366  AGAGAAAAAACACACACCCAGAAGACGACCTGAACCCAAAATTATACCAAGTGAGGAAGACCCAACCTTTGAAG  2439

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2440  ACAACCCTGAAGTGCCTCCGCTGATTTGAAACATCTGGCTGCGTTGCCATTGGCTGAGACCCACCAGGTCCAGT  2513

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2514  TTTGGTTGGTGTAGAGACCATATGCATATTATTCCTGGGATAAACACAGAGTTATTTGTCAATATCGCTGCTCC  2587

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2588  AGTGTTTTAACTCTTACTTTGCATAGTAATATCCTTAAGATAGCTTAAAATTAAAATGTATGTCTTAAATGCTA  2661

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2662  TAACTCATCATTTACCTATAATAAAGGGTTGGTATTGAAAATGTTTAGTAAGATCATAGAACTATTGCATAAAA  2735

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2736  CACTGATTATAAATACTGTCTACTTATGCAAAGTATTAATTCATAGATAAAAGGACTGAGTATTAAATTGGTAC  2809

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2810  TTCAGCAAAGTGGTCAAGCTTAGAAGTTAAAACTGTAATTTCAGACCCAATTGGAATACTTTAATATGATTTTA  2883

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2884  AACAGCATTTCCATTTTCCTTCCCATGATGTGTCTGCTTTCTCTGGTGGCATGGTATAATGGCAAGAATATGAG  2957

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2958  TTTTGAAACCAGACACTCTATATTTGGATTCCAGCTCAATCACTTTGTAAAGACCTTCAGCAAGTCCTTTAATT  3031

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3032  CTCTGAGCCTTAGTGGCTTCATGTATAATCTGGGAATAATAACACTTGCCTCACAGGTTTGTCTCAAGATAAAC  3105

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3106  TGCAGAAAGCACTTAGTACAGTGTCAGCCATACATTTAGAGCCTCTTCTCTCTCTCCTTCTTCCCTTTCTCCTC  3179

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3180  TCTCTTCTCCTCCCTTTCTCCTGTCTCTCCTCCTCCCTGCTCCTTCTTCCCCTCCCTCCCCAATTACTTTTCTC  3253

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3254  CCCTTATTCTTTTTCTTCACCTTTTTACTCCCCATCCCACTCCTTCTCCTCTATTTCCTTCTTTACTTTTTTAA  3327

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3328  TATCCTACCTCTTCTTTATCTAGAACATTATGAATTCAATATTTCACATACATTGTAGGACAAATTACTGTTAC  3401

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3402  TCTGATCATGATATAGCAACATTTAAGTCAGTTTCCCCAAATATTCATTCAACAAATACTTATTGAGCAACTAT  3475

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3476  TGAGTGCTAGCCCCCTCTCTGTTCATCAGGGATTTAGTAGTAACAAAGCAGACAAATACATACACACAGACTAT  3549

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3550  GTCAGGTGGTGTTCAGAGCTGTGAAGGAGAGTCAGAGTGAGGGAATCAAGGGTGATGGGTGCTTTTTCAGACAG  3623

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3624  GGCCTTTCTCTATTAAACAGGCTTCCAGTGGAAGACTCTGCTAATGTTTAGCAGATAACCAAAATGCATCAGTT  3697

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3698  AGAAAAAAATATGATGAGAATGAGGGACTGGTTATAGGAATGCAATTGGGCACAAATGTGGGAAGAGCTGGGTA  3771

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3772  GTGAAGCTCTAGAAGGGAGAGGTAGAGAATTGGAAGAAGAAGCACTGGTACAGGTAGACAATTCAGAACTTGCA  3845

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3846  CAGAATCTGAGAAGCTGAAGTAGGACTGTGATTGGGAGCTTGTGGAGAGGTCTATGGAAATTATCATGCTGCTG  3919

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3920  AAATTGTTGCCTCTATTTATCTGCTACCCTTCTGGTCCGTGGCCAAGATCCTGGTGGGTGGGCTTGGAGCCAGC  3993

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3994  CTTCGTCAGCAGGCCTGCGGTAAGAAAGATGGGATGGACACACAGTGGTGGAGATCAAGGATCAGCTGCAGCAG  4067

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4068  GCTGGGTCCCTCTGCATCTGTCCATCACTGCGACTGATGGCAATGACTGAGTATAACACCTTTCTTCATGGTCA  4141

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4142  ACTCTACCCAGGAACCACGTAGGGAAGGAAATTCTGGAAAACAGCTCCCAGCCTTAGCCAACTTGACATATCAT  4215

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4216  AATCCAACAGAACTCAACCTCTACCAACTTGGAAATCATGTACATTTGTCAGGACTGTATTTAATTTCCACATA  4289

Query  187  ---------------------------------------------------------------------  186
                                                                                 
Sbjct 4290  GAGAGAAAGCAAAATTATACTTTTGACCAAACTAATAGAATTATCCATTAAACAAACAAAACTGTGCCA  4358

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