Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15487
- Subject:
- XR_001737206.2
- Aligned Length:
- 4591
- Identities:
- 161
- Gaps:
- 4407
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTGCATGTGAGGATTAGGGAGCCCGGAAAGCCCGTTTCAACTTTTCAGTTCTGAGTCCCGAGTCACTACTCTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTGTACCGTCTGGAGACTTAATGGGAGCGAGTGCGAGGCAGTGAATTCTCCGCTCTCTAGTTTTCCAATTCTA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGTCTTCAAAAAAAGGTTTGCTCTTGAGCTGCGCCTAAACTGAGAAGCGGGAAAGGCTAGCCCCGCTAAAGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGACGAGTGGCAGAAGCGGAAACCCAGTTAAGAGAAGGGACTGCCCTGGAGAGCACAGAAAGCGAAGGTTAGCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGGGAAAGCGGCGCCCCTCCGAGGAAACCGACACCGCCCCGCCACGCCAAGGCAATGGGCGCCACCACGCAGCG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCGGGAACGCGCGCCGACGCCCCGCGCTCCGCCGGCGTCCGCCCGTCCCCGCGCGCCCCCTCGCACCCCACGCG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CGGGAGGCGGGGCCGGCGGGGGCGCGCGCGGGGCCGCGGGTAGGGGGGCGGGGCGGCAGAGCTCGGCGGCTGGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACTGGAGGACAGCGGTGGCGGAGGCGACTAGCGGCGGCGGGAGCGGCGCCGAGAGGCCGTGCGGGACGCGGGCG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCAGGACCGGCCGAACGCAGAGGTTGATTCTTCACCACACTGAAACCATTAGGAAAAATCCTTGTGGTTAACAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAGAGGCTTCAGAGTGTAACCTGTACTCGGGCCTAGAAATTATTTAAAATGGCGACTGATACGTCTCAAGGTGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACTCGTCCATCCTAAGGCACTCCCACTTATAGTAGGAGCTCAGCTGATCCACGCGGACAAGTTAGGTGAGAAGG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TAGAAGATAGCACCATGCCGATTCGTCGAACTGTGAATTCTACCCGGGAAACTCCTCCCAAAAGCAAGCTTGCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GAAGGGGAGGAAGAAAAGCCAGAACCAGACATAAGTTCAGAGGAATCTGTCTCCACTGTAGAAGAACAAGAGAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGAAACTCCACCTGCTACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAATGAAGAGAAGGAAGAAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATAAGTCTTCTGAGGAAACCAAAAAGGATGAGAAAGATCAGTCTAAAGAAAAGGAGAAGAAAGTGAAAAAAACA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATTCCTTCCTGGGCTACCCTTTCTGCCAGCCAGCTAGCCAGGGCCCAGAAACAAACACCGATGGCTTCTTCCCC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACGTCCCAAGATGGATGCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGAGTGGTGCATCAGTGGTTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTATTCGAAAATACATCATCCATAAGTATCCTTCTCTGGAGCTGGAGAGAAGGGGTTATCTCCTTAAACAAGCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTGAAAAGAGAATTAAATAGAGGAGTCATCAAACAGGTTAAAGGAAAAGGTGCTTCTGGAAGTTTTGTTGTGGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCAGAAATCAAGAAAAACACCTCAGAAATCCAGAAACAGAAAGAATAGGAGCTCTGCAGTGGATCCAGAACCAC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AAGTAAAATTGGAGGATGTCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAGAAGCTTCCTACAGTCTC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ATCAGGAAATATGTGTCTCAGTATTATCCTAAGCTTAGAGTGGACATCAGGCCTCAGCTGTTGAAGAACGCTCT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GCAGAGAGCAGTAGAGAGGGGCCAGTTAGAACAGATAACTGGCAAAGGTGCTTCGGGGACATTCCAGGAACTCC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GACCCACCTGGTGCAGAGGAGTCTTGTCTTGACCTGCTTTGGGAGAGTGTTGTCTTGATGCTTTTCTCTTCCTC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CTTGGAAAACAGCTGAAGAAATCAGGGGAGAAACCCCTGCTTGGTGGAAGCCTGATGGAATATGCAATCTTGTC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGCCATTGCTGCCATGAATGAGCCGAAGACCTGCTCTACCACTGCTCTGAAGAAGTATGTCCTAGAGAATCACC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CAGGAACCAATTCTAACTATCAAATGCATTTGCTGAAAAAAACCCTGCAGAAATGCGAAAAGAATGGGTGGATG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GAACAGATCTCTGGGAAAGGGTTCAGTGGCACCTTCCAGCTCTGTTTTCCCTATTATCCCAGCCCAGGAGTTCT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GTTTCCGAAGAAAGAGCCAGATGATTCTAGAGATGAGGATGAAGATGAAGATGAGTCATCAGAAGAAGACTCTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AGGATGAAGAGCCGCCACCTAAGAGAAGGTTGCAGAAGAAAACCCCAGCCAAGTCCCCAGGGAAGGCCGCATCT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GTGAAGCAGAGAGGGTCCAAACCTGCACCTAAAGTCTCAGCTGCCCAGCGGGGGAAAGCTAGGCCCTTGCCTAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GAAAGCACCTCCTAAGGCCAAAACGCCTGCCAAGAAGACCAGACCCTCATCCACAGTCATCAAGAAACCTAGTG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GTGGCTCCTCAAAGAAGCCTGCAACCAGTGCAAGAAAGGAAGTAAAATTGCCGGGCAAGGGCAAATCCACCATG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AAGAAGTCTTTCAGAGTGAAAAAGTAAATTTTATAGGAAAAAAGGGTATCATGATGAAATTCAAAATCTTATTT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TCTAAGGTCAGTGTGCATTTGTTTAGTTTTGATGCTTTTCAAATTACATTATTTTCCTCCCCTATGAACATTGT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GGGGAGGGACTCTAAATAAACCAGTTTAGGCATTTGCTAGCTTTAGGTGCTTTTATTGGTGCCTGCCCTTTTCC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTGTTCATTTTAATTTCTGCAATAATCCTGGACTTTCCTAAACTATGTAATGTATACTTGTCCTTTTTCTCTGC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTCCCCCAACCCCCTGTTGTTTTTATGGTCAGCTTTGCCTTTTTTTTTTCTTCCAATTTTATCTAAACAGTTGC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AGAGATTTTTATATTTGTAGAAAGCATCAAGAACGGTATGCCAGTCAGGTCCTGGAAGTAAAATGGAGGCACAA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TATAGCACTGACTGAGTTGTAAAGCCTCCTGCCTGGAGACTTCAGTTATAGCTGTAATAATTAATCTTATTTAT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AAAAGCCACTCCACTAACCTTTTCTCTCCAACTGTAAACACAGAGACAGCTTTGGGAATAAGCCAAAAACAGGG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TGATCTCATTAGATTTTGAAGATATATGACTCCTTTGGGCTACATTTCATATTGATCAATTTCTAGGTATTTTT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CACTGGCCCAAAGTATTGCATTCCCTTAACAGCAAGCACAAGTTCTCTATATCACTTGTTTTTTGTTGTTGTTG 3182
Query 1 ------------------------------------------------ATGCAGTGGCGCCATCTCAGCTCACT 26
.||||||||.||.|||||||||||||
Sbjct 3183 TTGTTGTCGTCGTTGTTTTGAGACGGAGTCTTGCTCAGGTGCCCCGGAGTGCAGTGGTGCAATCTCAGCTCACT 3256
Query 27 GCAACCTCCATCTCCCAGGTTCAAGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGC 100
||||||||||.||||..|||||||||.||||||.|||.||.||||||.|||||||||||||||||||.||||.|
Sbjct 3257 GCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCTTCAGCCTCCCGAGTAGCTGGGATTACAGGTGTGTAC 3330
Query 101 CACTACAC---TCAACTAATTTTTGTATTTTTAGGAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGA 171
|||.||.| .|||.| |||||||||||||||.|||||.||||||||.||.||||||.||||||||||||||
Sbjct 3331 CACCACGCCTGGCAATT--TTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCGTGTTGGTCAGGCTGGTCTCGA 3402
Query 172 ACTCCTGACCTCAAG----------------------------------------------------------- 186
|||||||||||||.|
Sbjct 3403 ACTCCTGACCTCAGGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGAGTGAGCCACTGTGCCT 3476
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3477 GGCCTATCCCACTTGGTTTTTGACTGAAGGGGAAGTGTAGAAATATATTGATTTGTGATTTCTGGTGTCACCTG 3550
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3551 TGTTACCAAAAATCAAAACAAATCTTTTTTATTTTTTATTATTATTATTATTTTTGAGACAGAGTCTCGCTCTG 3624
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3625 TCGCCCAGTGTGGAGTGCAGTGGTGTGATCTTGGCTCACTGCAAACTCCGCCTCCCAGGTTCAAGCGATTCTCC 3698
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3699 CACCTCAGCCTCCTGAGTTGGGTCCTACAGGCGCACACGACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGA 3772
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3773 GTTGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACTCACCTCAGCCTCCCAA 3846
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3847 AATCCTGGGGTTACAGATGTGAGCTACCACTCACGGCCCAAATCTTCTTGATCATATGTTTAAATATATTTTTT 3920
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3921 AATATTTGGAGCATGAGTTGTCACTTCTTGTTTGCCTTTTTTATAAGGAAATGTTGGAGAGTTACATCATTGCT 3994
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3995 AATGTAGAAATGTTAAGTGGAAAAATATACAGTTTGGTAAAATAAACTAGATTCTACATTTATTTGTGGGTTTT 4068
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4069 TTTCCCCTCCTTTCTTTCCACAGCACTTTTGATATCAAGCAAGTGGCTTCCTTTTTGAGATATTAAAAAAAAAA 4142
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4143 AGAAAAGGAAAAAAGTAAATGAAGCCCAACTACCTAACCCTTTCTTATTTGTATTTGTTTTAGTATTGTGAAGT 4216
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4217 TGTGTTAAATAGTACTAGCTAGAAATACAAATTTCTGGTTATCATTTCTCTTCCCTGTGGCACTTGACATTTTA 4290
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4291 ATTGTCTTAAAGTTTTTGAAGTACATCTTCTGGCCCCTTGAGTACTGCCAGAGGCAAAAGATGTTTGTTTCTTA 4364
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4365 TTCATTCCACTTTTGTCTCCTGGGATCCCTTCTGTAGCCTAAAGTATGGCTGGGAAATGGACTTGAGAAGATTG 4438
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4439 GCTTGAATTAGATCATAATCATGTGTGATCCCATCATGAATTCATTGGAATTTGTGTTGCATGTAAGGCAATCT 4512
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4513 TTCCTGTTGTAAATCTTCCTTTTTTAATGTACATATATTTTGAAAAATATGAATAAACATGAAATTTTAAAAGC 4586
Query 187 --- 186
Sbjct 4587 TGC 4589
