Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15487
- Subject:
- XR_001743167.1
- Aligned Length:
- 4590
- Identities:
- 160
- Gaps:
- 4404
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCCCTGGGAGCTGTGTGGCCGCGTGCGCGCTCCGCCGGGGTCCTGGAGGCCTCTGGGCGCGTGCGCGGGCGGTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCTACCTGCGGCCGAGCCAGGGAGCGAGAGGGCGCAGAGGGCAGCGGGCTTGGGCAGCATGAGGCCCGGAGGGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCGGCCCGTGGAAGGGGGCGCGTGCAATGGCCGCTCCGAGCTGGAGCTACTGAAGCTGCGCTCGGCGGAGTGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATCGACGAGGCGGCCGAGCGGCTGGGGGCCCTGAGCCGCGCGATCTGGAGCCAGCCCGAGCTGGCCTACGAGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCACCATGCCCACCGCGTGCTGACGCACTTCTTCGAGCGGGAGCCGCCCGCGGCCTCCTGGGCAGTGCAGCCGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACTACCAGCTGCCCACGGCCTTCCGCGCCGAGTGGGAGCCGCCGGAGGCCCGGGCACCGAGCGCCACGCCACGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCGCTGCACCTGGGCTTCCTCTGCGAGTACGACGCGCTGCCCGGCATCGGCCACGCCTGCGGCCACAACCTCAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CGCTGAGGTCGGGGCGGCGGCCGCGCTGGGCGTGAGGGGGGCCTTAGAGGGCCTCCCCAGGCCGCCTCCGCCCG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGAAGGTAGTTGTCCTGGGAACCCCTGCAGAAGAAGATGGTGGTGGCAAAATTGATTTAATTGAAGCAGGGGCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTTACAAATCTTGATGTTGTTTTTATGGCCCACCCATCACAAGAGAATGCTGCTTATCTACCAGATATGGCTGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACATGATGTGACTGTGAAATACTATGGAAAAGCATCTCATTCTGCTTCTTATCCCTGGGAAGGATTAAATGCAT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TAGATGCTGCTGTGCTGGCCTATAACAATCTGTCTGTGTTCAGACAGCAAATGAAACCAACCTGGAGAGTTCAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGTGGAAATTAAAGGTGGAGCACATGATTATTACAATGTTCTTCCCAATAAGAGCCTATGGAAAGCCTATATGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAAATGGAAGAAAGCTAGGAATAGAGTTCATTTCAGAAGATACAATGTTGAATGGCCCTTCAGGATCTACGGAT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTTGGAAATGTTAGTTTTGTGGTTCCTGGAATTCATCCATATTTTCACATTGGATCTAATGCCTTGAATCATAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TGAACAGTACACTGAAGCTGCTGGGTCACAGGAAGCTCAGTTCTACACTCTGCGGACGGCCAAAGCTCTGGCAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGACGGCACTGGATGTTATTTTTAAACCAGAGTTACTGGAAGGAATCAGAGAGGACTTTAAACTGAAACTTCAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GAAGAACAGTTTGTAAATGCAGTAGAATAAAAGACTTAGGGGCCACTTATAAATCAAGAAGACGTGATGATTTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTTCTTTTAATCTCTTTTAATGAAGGCATGCTTGTTTTTTAATCTTAAAGGAGTAAAATTCTTTTTACCTGATA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGTGAGGACAGGGTGTGGAGAAAACATATTAATTACCTCATATCTAAAGTGAAAATTTTTGCAAATCCGTACTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GATAGGATTATGATATTACAGGAGCTGGTATGTGATGCCATTCTTTCTTTTTTTTTACCCCGCAACCACTCACC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTCACAGTAGTGATACCATTTCTTAACCTGGAGGATACATGGCATCATTTTTATAAAATATGTTAGTAAACCTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTTGTAAGCCTTAAATGTTATGTGTATTTTTAAAAGCTTAAGAGATTTCAAACCTTATATTCAGAATTGACACC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CATGAGAGTGTTTTGTGGTATAGGGTGGTAAACTTGTTCTCTAATCGTATATTAATTCCTCTACCAGATTGTAT 1776
Query 1 ------------------------------------------------------------------ATGCAGTG 8
.||.||||
Sbjct 1777 ATTTGAAGCCAGTGTCTTTCCTTTTTTTGTTTTAAGATAGAGCCTCGCTCTGTTGCCCAGGCTGAAGTGTAGTG 1850
Query 9 GCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGTTCAAGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCT 82
||.|.|||||.|||||||||||||||...||||||||||||||.|||||||.||||||.||||.|..|||||||
Sbjct 1851 GCACAATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTACCAAGTAGCT 1924
Query 83 GGGATTACAGGCGTGTGCCACTACACTCAACTAATTTTTGTATTTTTAGGAGAGACGGGGTTTCACCCTGTTGG 156
|||||||||||.|||||.|||.|..|.||.|||||||||||||||||||.||||||||..|||||||.||||||
Sbjct 1925 GGGATTACAGGTGTGTGGCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGCATTTCACCATGTTGG 1998
Query 157 CCAGGCTGGTCTCGAACTCCTGACCTCAAG-------------------------------------------- 186
||||||||||||||||||||||||||||.|
Sbjct 1999 CCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATGCACCTGCCTCGGCCTCCTAAAGTGCTGGGATTACAGGCA 2072
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2073 TGAGCCACCGCACCCGGCCTGCCAGTGTCTTTTTAATACACATGTGTGTTGGTATTTTTAAATTGTTACAGTAT 2146
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2147 CTAGCATATTGCTTACTCTGAATATTCAGTACTTTTTGAATAAGCAAATATTGCTTCCTTGCTTGGAATCATCA 2220
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2221 GAGTTTAAAGTAGCTTCGTGGATGGACCATGATCCTAAGATGAGTTTTAATTTTGTGTTTACAGTCATCTCTTG 2294
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2295 TACAACGTGGAGAAGAAAAGATATACTTACTACTTTGCTTCAGGTACACATAAGAAAACCTCTTTTTTAAAAAA 2368
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2369 ATTTTTATTTTTTTACATAATAGAGACAGGGGCTCGCTGTAGCTTCCAGGCTGGCCTCAAACTCCTGGGCTCAA 2442
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2443 GCAATCCTCCTGTCTTGGCCTCCCAAAGTGTTGGGATTTCAGGTATGAGACACCACACCTGCCCATTTTTGTTT 2516
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2517 GGTTTTTTAATGGGCAGGTTCTTGCTCTCCCAGGCTGGAGTGCAGTGGTGTAATCACAGCTCACTGCAGTCTCG 2590
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2591 AACTCCTGGACTCAAGCAGTCCTCCCACCTCAGCCTCCTAAAGCACTGGGATTACAGGCTTGAGGCACTGCACC 2664
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2665 TGGCCCTGACCATTTTTTAAAAAGGTTAGGCTTAGTGCAAAGTTTAAAATTATATGATTCTTAAAATACTGAAT 2738
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2739 TAGTTTCTAAACTAAACTAGAGGTATAGGTGGACCTGCTTGAGGTATCTTTGTTTTTATGGAACATTTTTATTA 2812
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2813 CATGCCTTTATAATTTTTCATTGTTCACACCCTGTACTGAAACCTTTTTCTCAAATACCAACTCTTGGCTATGT 2886
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2887 TAAATTTGTAGACTTTAAAAGATGTTATCTAAATTAATGGTTTAAATATACAAATTGAAAATATTTTCTTTTTA 2960
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2961 GTGGCAATTTTAAAAGCAGGCCTTAATATGGGACCTGCTTTTAAAGTAAAATATGTGGTACTATGAATTACTAA 3034
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3035 ATTGCTATATACCATGTAATAGTGAGTATAGCTAATATTTAGTATGCCTTTTAAAAATTTTGGACTGCTTTTCG 3108
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3109 GTTTTAACAAATTCTCCACATGTGAACTACTCAAGAAATTTTCCCTTTTTAATTGCCTCTATAGCACTCATAAG 3182
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3183 AGCTAGGGCATTAGGATAAACTAGAATATTTTATGTTTATGAATACTTGTATAAACTTAAAAGTGTTTTGATTT 3256
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3257 CCCACAATTTCCCAAAGGAATGTTTATTTATTAAGAGTTGTGTTGATAATTTAACTGTTACAATTTCAGCAGTT 3330
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3331 GAATTCAGTGAACACTGGTTGAGGAGTGCCTATTTCTAAGCACTGGGTGTAAGAAGAAAAGACACTTGCAAAGG 3404
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3405 AAGAGCTAAGATTAACATAATTTCTTTGGTTTTTCTATTGCTTGTTATTATTATGTAAAAACTGGGTGGCAGTT 3478
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3479 CACAAGGAAGATTGTTGTAACAGAAGAGTGACAACCAATAGTTTTTTGATCATTAAATCAAATTTTGTAAACAG 3552
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3553 TGGCAGGAGCGTGGACTTAAAACAAGGCTTGCTTATTTGGTTTTGTCAAAGTTTTACGAAAATATATGATATAT 3626
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3627 ATTTATACTAAAACTATATAATCCTTAGATTTAGGAAAGCAATCAGTTAATGTCTTTAGCACACTAAAGCAGTA 3700
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3701 TTAAACACAGGTACAAGTTGGAAATTGTAGAAAACTGAAAGAAAACAAGACAAAATGTCTATGGTAGGGAATAA 3774
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3775 AAGAGTTTAAGATATTATGTAAAATTATGTGTATTTTCTTCTCTTTTACATAAATTGTTTGTGAAAAGTGTGCT 3848
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3849 CAACTTTTTTACAAGAGTGATATTAACTTGGATTTATTTTTCAATATAATTTGGAGACCCTTTGTTATCCAAAT 3922
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3923 AAAATTGATGAGTTTCTGTGCCTGTAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGACACTGTTGCATGCCCCA 3996
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3997 GAAAGCTTGTGGTGGGTGGTAAGTTCTCACGAGATTTATTTATCTGAGCAACATTGGGACTGAGGGAACATCTG 4070
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4071 AAAGCTACCATCTTGAAAATTTTTGAGGAAGTGTTTCTGAAATATTTAAAAATACTTAAGTCAGTCATTTTGAA 4144
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4145 CAAAAGAAATTGATACAATAAGTTTTTTTTTTTAAGGATGATTGTCTAATTTTGTAATATGTTGTTTTTTAAAA 4218
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4219 ACCTGTCTGATGGTGTTTTATACATTTCTAACTTTTTACCTGAGTTATCTCTTTAGTCTTTTGGAAAATACCCT 4292
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4293 ACACAATACTAACCTTTAAAACTATCAAATTTTTGTTATAAGATAAATGTTATCTTTGTACTAGATAGCAACCC 4366
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4367 TTTATAAGGTTGTAAGGTATAATAAACTGCTTATTTTTTTACATACTTCATATCAAGCATTTTGCAGTCCAATT 4440
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4441 ATATAGTTGAGGATGGTGTATTTTGATATGTATGAAGTTAATATTTTCAAGTAAGCAATCAGTCTACTACCATC 4514
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4515 AGATTATAAGCTTTTTTGTAATAATAGGTACATAAAATGTGTATGAAAAATCTACAATAAACATGTTTATCTGA 4588
Query 187 -- 186
Sbjct 4589 TA 4590
