Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15487
- Subject:
- XR_001744071.1
- Aligned Length:
- 5003
- Identities:
- 161
- Gaps:
- 4817
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTCGAATTTTTAGGCCGAGAAGATACAGTGTGTGTGGTACTGTCTACAAACCAACGAATTTATATTGAAGCTAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AATCACAATCATTGTTATTGCTGCAAAACAGGTATTCTCTTGGCCAAACTCAAGCAGGAGTCAGAGGATAAAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCCCATTGAAAATGTCCATACTGATCAGCGCCAGGGCAGGCAACAAGATGCAGAATGGGGCCAGGGTACCTGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATGATACACAGCACAAGGTCTAAAATTGAGGAATCAAGAAATAGCAAGACGGCCAGGTGCGGTGGCTCATGCCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTAATCCCAGCACTTTAGGAGGCTGAGACGCTTTCCTTCTGCAGACTGCCTTTCCTGACAAGAACAGACTCAGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAGTCTGTAGAGTGGTTCCGCCCCGAAGCTGAAAAATAGTGTACAAAGCTGTCACGAAGTTTCCACTGCACAGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCCAATGTTCCATTTGCTCTGGCGACAGATCTTTCGGTGACCTTCGAAAGCGACATCGAGATTGACGATGTATA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGAATCTGCCGCCAGAAAGCACTGCATGTTGCCCAAGACAGTCACAGACATCGCAGTTGCCTGGGAGTCACGAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ACTCTACCACTACGTTCTCGCTGCTCCATCGCGCCGCCATCTCCCACTCTCGGCCGCCAAGGCCCCAGGACCGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCCCTCCCATCCACCAGACCCGGGTCCCCTGGCCCTCTGAGCCCTACACAGCCCGCGAGTCAGCCCTGACACGT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCAGTCCCCTGCTTCTTTGTGTTTTGATAGAAAACAAAACAAAACAAAACAAAACAAAAACATCTTGCCAATCC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATTTGGCTTATAAAATAATGTATTGTGCACATTTATTATAATGATAATAATTACATAAGAAGTAATTTGGGAGA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ATGGGGTCCAAAATCAGCTATAGTATAGTCATGAGGGTTGCACCTGGAAGAGACTGCCTCTCTGATGTTCAAAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TTTGAGAATTAGTCCTTAATGAATAAATGTATATAATGCAATTTTGAAGTTTATACTTTCCTTGTTTGAACAGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATAGAATCAGCACTAAACAGAAACCAGTACAATTCTCAATAACAAATTATCTCAGTAGAGGTCCAATAACCCTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TGATAAATATGCGCCTGTTCTTCTCCACTGTCTGACCTACTTATGTCTGCATCAAGTATCCCCAAACTGCTCTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCAGGAATATACACCCGAAGAGCCCTCTGAGAACTGGTTTAACTAGTATTTTGGCTTGTTTTGGGTGCACCTGT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GACCTAATTTACAAGACCAAGATTAATTAAATGTTCATGCACAATTAAAAGACAATTTTACTTCAGTAGTATGA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGCTTAATTTCTGCTTATAGAATTCATTTTTTATTAGTTATAAATTATGCTAGATGACATAGAGAGGAATATCA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AATGCAGAGGATTCTTAGCCTGAGATCCATGGACCTCAAGTGTTTCACGAACACCTTGAGATAGTTTTCAAAAT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGTATATGTGTGTATCTAGGGGCATCTTTCTGAGAAAGGGATTTCCTAGATTTTATTCAATATGATCTGGAGTC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CAGAGCAAAAAAATATTGTACAAATCTTTGCTCTACTAACTTCTTGACATTGGGAATTTGAGGGAGAGGAATTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TCCATCAGCTTTTTGTTTTTTGGGAAATAAATAAAATGACTATGAGCAAACATGAAGACAATTCCCAAACCAAT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TCCCAAAGACTGGTACCAGTAGCTCCTGGTGCAGAACCAACTTCAGCATGGCAGGGAACAAAGAAATGTTCAGT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TATACTGAGGGCAAAAGGACAATGAGAATCTCCTAAGTTCCTCAAAGTCACTTCTGTTGCTCCCTGATGTTTAC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGTTCAAAGCAGATACTTGTGCTCCTAAAACAAACAACCTTGAAGCCCTGGCCTGATCTATGGTCTCAGCCTAT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCTTCAACTTTTTCTCAGCTCTTCTTTTACTTCCACTATGGTATGGCCACCCAGACAACCAGTCCACAGACTAC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GCCCTTATCTTGTATCTCACAATATGTGAAAAGGTTTGGGCCAACACCGTCTTCTAAATACCATCTTCAATCCC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TGCCTAAACTCAAATATCCAGCTTATTTCAGCTTCTCAGTTTATCTAGGCTGTTAGCTTCCAGTCACCTGCAGT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TTTCCCTAACTTTCTCTGTGTGGGTGTTACTTTATTCACTGTTTTTAGCCAATATCTCATCACTACAAACTGAA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ATCTCCACAGGCAGGGCCAGTGCTTAGTGTCCTGCTCAATTCTGTGTCCACAGCACTAAGGGCAGCAGTGGGTG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TGGCACAAAAATTTGTCCTTCCTATTTTCAAGTCCGTATACTCTCAGGTCAGTTGTAGGCTGTGCAAGCTGTAC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CACTAGGTCTGATATGTGGCTCATTAAGCAAAAACAGGAGAGAATTGTACCAATGCACATTGCAAGCCAGAGTT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CTGAATTCATTTTGAAGAAGTAACTTCATTTGGTCACATTTTTGTTCTTATTCCCGTGAGCAATAGTTTCCATT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TAATTGGGAAGATATAAAGGAGAGTTCCCATATATCCCCACACTCAGTTTTCCTTATTATTAAAATCTTACATT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GGTATGGTACGTTTGTTACAAACAATTAACAAATATGTATACATTATTATTAACTAAAATGAATATGTTAGATT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TCCTTCATTTTTACCTAATTTCCTTTCTCTGTTCCAGGATCCTATTCAGAATTCCATGTTATTTTTAGTCATCA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGACTCCCTAAGCTCTCTTGGCTGTGGTAGTTCTTAGACTTTCCTTGATTTTGATGATCTTGACAGTTTTGAAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AGTGTTGAGCAGGCATTTTGTAGAATGTCCTTCAACTAGGATTTGTCTGATATTTTTCTCATCATTAGATCGGA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GTTAGGGGTTCGAGGGAGCAAGACCGCAGAGGTAAAGTGGAGGGTTTTTGTTTGTTTGTTTGTTTGTTTTGAGA 2960
Query 1 -----------------------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGG 45
||||||||||.|||||||.||||.|||||||||||..|||||.||
Sbjct 2961 CAGGGTCTCCCTCTGTCACGCAGGCTGGAATGCAGTGGCACCATCTCGGCTCTCTGCAACCTCCGCCTCCCGGG 3034
Query 46 TTCAAGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACACTCAACTAATTT 119
||||||||||||||.||||||.|||||.||||.||||||||.|||||||.|.||||||.||.|....|||||||
Sbjct 3035 TTCAAGCGATTCTCCTGCCTCAGCCTCATGAGCAGCTGGGACTACAGGCATCTGCCACCACGCCTGGCTAATTT 3108
Query 120 TTGTATTTTTAGGAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------- 186
||||||||||||..|||||.||||||||||.|||||||||||||||||||||||||||..|||||||
Sbjct 3109 TTGTATTTTTAGTGGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTTGCCTCAAGTGATCCA 3182
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3183 CCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGAATAAACCACCATGCTTGACCTAAAGCGCCATTTTTATC 3256
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3257 ACGTTATATCAAGACAATATACTATCAACATGGCTTATCACTGCTGGTGTAATGCTTTTGGGATTTATTCACTG 3330
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3331 CTTACTTTCCCACCCTTTTTCATACTGTATTCTGTAGAGCAATCACTATGCAGAGCCCACAATGAAGGGGTGGA 3404
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3405 GTTATCTGGAATTCTGCTCAGGAGATTCCTTGAAAAACTGAGATTTGTTGCACATCAGGGAAGCTGTAGGGATT 3478
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3479 GGTTTGAAGTCTTCTATTTATTGTTTCTCAAATTGTTTCAGCTTTGACCATTACAGGCATATATTTTTAATTTT 3552
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3553 TTTTTTCAGAGAGCACAGAACTTGGTACAAGCCCTAGCCCTTAGAAATGCTCATCTTAAATTTGTTACATGGAC 3626
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3627 CTTCAGTTTTTCAAAAGCCTCCAGTGGGCTAGATTTTTATTGAAAATGCTTAGGATCCTCATGCTTCTTGTTCC 3700
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3701 CGAGGCTCCTGGAAACCACCTTTAGTTATCCCGTTTGGTAAGAGGGTTTCATTCTGTCTTGCTTTCTGGTAGTG 3774
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3775 AGTGGATCAGAAAGTCATAGGGCTGGGAGAAGATGGACTGGATGAGATATGTACGGATATTCTCTTTGCCACTG 3848
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3849 TACAGCGGCCATTGCAGCTCCTGCCGCAGAGCCCACGGCCCTACGGGCGGGACCCATTTTAACCTGGTAGTGAC 3922
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3923 AGTGCCGCCTCATTGAAGCAGGAAGGATTTTTGTCCATGACACTAGACGTCTCTAAGCAATAAAGTAATTTTGG 3996
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3997 CAGATGCCGATACCTCTCATGTGATCTTGTTGGGAAGGTTCAGATCCTATCACCTGAGATTATTTACTCTTAAA 4070
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4071 GACCCTCTGCCTCCTTCCTCAGCCTTTCTGTTTGACAACATAAGATCGCTTTTATCTCCTGCAATGAACACTCC 4144
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4145 TAGACAAGTCATGTCCGGGTCTTGGTATCAGTAAATTTTTACTGCTGAATATTTTGGGAGAGGTTCTCAGTTAA 4218
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4219 TCCCATTGAGAAAGACCAAGTTAAAGCTTTATCAGTGAGAAACTAATTACAAAATCCTGCCTTGCAAATATTCG 4292
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4293 AGCTTTTAACAGTGCTTTACTCTTTGGTATCCACGAGGTGGAGCCTTCCCGGGAAGCAGAAAGCATCTTTTGGT 4366
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4367 GTCCTGTTTTTTGTTTTTTACCCTCGGCAACGCCACGGGTGCCAGGACTAGTTGACACGCCGCCTCAATTTAAG 4440
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4441 TCATCCATAATTTATACGTTACGAAATGGAACTTTCAAAAGTGTTCCTAGCGTTAGGAGCAAAGAACGCCGGAC 4514
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4515 AAACGCTCGGGAGGCGGCGAGCCTCGCGGTTCTTCCAACAACGCAATCTGTCAGCGCGGCTAGGTTGGTGCCCT 4588
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4589 CTCCCCCTGTATCGGGGCAGCCCGGCTTAGGGCCGCAGAACCGAGGCTGGGGAGCCCCGCAGGCTGTTGCTAAG 4662
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4663 AGTCCAGGGGAGGCACGGACTTACCTTATCTGCCCCTGGAAACAGATTTGCTCTTGGATCTTGCACGAAGAGCC 4736
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4737 CTGTGAGAAACGAAAAGGGAACTTGTGTGATGGCGGCAGATAACGAACATTAGGGTAGAAACTTAGGTTCTTAA 4810
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4811 AGGGAAGACAGCTTGAGTTCGGAAATGAAGATATATTCCTTCAGGAAGGCCTGTTAAAAACACGAGCTATTGCG 4884
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4885 AGGTTCCATGGTGTAATGGTTAGCACTCTGGACTCTGAATCCAGCGATCCGAGTTCAAATCTCGGTGGAACCTG 4958
Query 187 --------------------------------------------- 186
Sbjct 4959 TCGTTTCTTCTTGCTTCCTCACTATTTTTTTCTTTCTAAAATAAA 5003
