Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15487
- Subject:
- XR_002959009.1
- Aligned Length:
- 4161
- Identities:
- 156
- Gaps:
- 3981
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCCGGGGAGGGGGAGGGGGAGGCGGAGGGGGAGGGGCAGAAGAAGGGGGCAAGGAGGGCAGAGAGATGAGCGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAAGAAAGGAGGGGTGCGGGAAAGGAGGAGAGGAAGGAGCGGTGGGAGGAGGAGGAGGGGTGCGGGAGAGAAGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCTGAGGGAGAGGCGGAGGGAAACCGCACCCCTGCCTCTTTCCTGGGCCGAGGCCAGCCGGGGAGGAAATGTTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAATGGGCGAAGTGCACATCCGCCTCCAGGCCTAAGGGGTGTACGGGTCAGGCCGCACCGACCCCGCCCTTCCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGCCCTTCCTGCCAGACCTCTGCCTCCGATGGGCGAGCCCGGTTGCTGGGAGGCGGTTCACTATGGAGCCTGGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCCTCCCCACAGTTCAGCCCGCCGGAGGCGTGTGCGCTTCCAGATGAGAGCACTTGTTCACTGAATGACCGCAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCATTGTTAATGGGTGCGTGTGTACAGTTCTGGGCACATACCAACATGCACGGATGCATGTTAACCTGCTTTGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATGGAAGAAACGGGGTCAGGATATCATAAAAAGAATTAATGGGTAATCAGTATTCATCAAATGCCAAGATCTAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTCTGAGCACTTTGCAAATATTAATTTAATCACCACGAACCTCAGTAAAGTTTATTACTATTACTCGCATTTTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAGATGAGGCGCCTAAGGCACAGAGAGGTTAAGTAGCCTGCCCAGGATCACACAGCTACTAAGTACAGAAGTCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAATTTGAGCCTGACTCCAGAGCTCATAAGGTTAACAACGAGGCCTCCCACTTTTATATGCGTATTATTCCATG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AATTACTGTTTACACTAAGAATATGTTCTTTTCTGCAACCAATGGAAGATTCCTAGAAGAGGAACTACTGGCTA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TGTGGCATTGAGATTTTTCTTTTTTCTTTTTTTTTCTGAGATGGAGTCTAGCTCTGTCGCCCAGGCTGGAGTGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGTGGCACGATCTCAGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGGTTCTCCTGCCTCAGCCTCCCAAAT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATCTGGGATTACAGGCCTGCCACTATGCCCAGCTGATTTTTGTATTTTAAGCAGAGATAGGGTTTCACTGTGTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGCCAGGCTGGTCTTGAACTCCTCACATTGTGATCCACCCGCCTCGGCCTCCCAAAGTTCTGGGATTACAAGCG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGAGCCACCGCGCCTGGCCGTGTGTTTGAGATTCCTAGAGACATTAGTAAAACCCTCCAAAAGAGTGGGGACCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TACACCAGCCTGCCGGTTCAAGCTCCATACTGGACCTCCACCTCCCCAACCCCCACCCCCACCCCACCAGAAAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGACCCTCCATCCCCTTCAGGTCATAGAGTGAGGAAGAGGGAAGCTTCAACAGGCCCAGATGGCCCTGGTAATG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GGCACGGTGACATTTGGGCAGAGAACCCCAGGGCCCTGCATCTGCAGACCTGGGACAGGCAGAGAATGTCCAAT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGGGGTGCTAGTGGCATTGCCTGGCCATGACTCTGTCCAGCTGTGGCATCATGTCCCATGGCCAAAGTGTCCAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GCAAGCCTGCTTCTGCCATTGACCTAGGGAGGCCTCTTGACACCTGCTCATTTTCCAAGCCTGTTCCTCCTGCA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TCCTCAAGATTCGGAGTGCCCTCCAAAATAAGATCTTTTTCTGTAGTTGTTACTATGGGTTAAGAACCCTCCTG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TCTGATACATACAACTGATTACAAACTTTTAATTTTTGCCAATCTGATAAGCAAAAAAAAAGAAAGTAGTTCAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GGATTTAGTTTACATTTCCTTTTTAACAGGGAGGTTGGGTAGAGACTTCTTGGTTTGCTCATGCCTGTAATCCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGCACTTTGGGAGGCTAAGGTAGGAAGATCGCTTGAACTCAGGAATTCAAGCCAACCTGGGCAACATAGCAAGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCTCACCTCCACTAAAGGGAAAAAACAATCCATGTTCCTTTTCTTCCAACCCAACAGATCTGTGGCTGGGCAGC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AGCTGCTGAGCTCAACTACAATTCCAGCCTGCTTTACAGTTAGGCTTGTCCACAGGACCAAGTTCTCAGTGACA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GAGTAAGAGCAGGCCTGTGATAGGAGCCTCTTCTGTACCTCGGCCTCCAAGATGCCTAGAATCTGGCTGTGGCA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GTGCCCAAGGGGAGGCGAGCAGCAGGAGAGAAGGGTCCTGGGGTTTGGGGGGACCAGGAGGAGCAGAGCTGCTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTCAGCTCAGATCCATAACCTGAGAAAGAAAGAGGGATGGCACATTTTATGTGTTAACTTAAATATCTGGCTAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ATCGCTCAGATATTTGATTAGACACTATTCTAGATGTTTTTATGAAGGTATTGATTAATTGATTGATTGATTGA 2368
Query 1 -----------------------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGG 45
.|||.|||||.|.||||..|||||||||||||||||.||||||||
Sbjct 2369 GACAGTCTCACTCTGTTGCCCAGGCTGGAGTGCGGTGGCACAATCTTGGCTCACTGCAACCTCCACCTCCCAGG 2442
Query 46 TTCAAGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACACTCAACTAATTT 119
||||||.||||||||||||||.||||||..|||||||||.|||||||||.||||||||.|..|....|||||||
Sbjct 2443 TTCAAGTGATTCTCGTGCCTCAGCCTCCCAAGTAGCTGGCATTACAGGCATGTGCCACCATGCCTGGCTAATTT 2516
Query 120 TTGTATTTTTAGGAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------- 186
||||||||||||.|||||.|||||||||||.|||||||||||||||| ||||||||||.|||
Sbjct 2517 TTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGT------CTCCTGACCTGAAGTGATCTG 2584
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2585 CCCACCTTGGCTTCCCAAAGTGCTGGGATTACAGGCCTGAGCTACCACAACCGGTGAAAGTACTTTTTAAGATA 2658
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2659 AGATTAGCATTTAAATCAGAAGATTTTGAGTAAAGCAGATTATTCTCCACAATGTGGGCAGATCTCATCCCATC 2732
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2733 AGTTGAAGACCTTAAGAGAAAAGAGACTGACCTGCTCTGAGCAAGGAGGAATTCTGCTGGCCAACTGCTTGTGA 2806
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2807 ACTCCAACTTGTAATATCAGTCTCCAGCCTACCGGCTTACTCTGCAGATTTTGGATTTGCCAAGCCTCCACAAC 2880
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2881 CGCAGAAGCCAATTCCTTAAAATAAATCCCTTACAACAGTTCCCTAAAATAAATTCTTCAAAATTCCTTAAAAT 2954
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2955 AAATGTGTGTGCATGTGTGTCTGTGTATATATATAGCCTATGTAATGTCTAATATAGATCTATAATATATATTA 3028
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3029 GATAAATATACACATACTTATCATATATATATGTGTGTGTGTGTGTGTGTGTGTTTCTCCTATTGGTTCTGTTC 3102
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3103 TCTGGAGAACCTAATACAGAAACAAATCTGTTTATTCTTCTAGCCTCTGTATCATCAGGCCTCTTTGTTAGAGC 3176
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3177 AGGTGAGCTTTACCCTAACTAATTCAGAGGTTGATTCGTTTTCATGCATGTAGATACTTGTCATTTAGCTTCTA 3250
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3251 TTATCTGCCTGTATTTTAAGGTTCTTTGTCTTAAAATGTTATGACTCCAGGAATGTTATATATTAAGTATATTA 3324
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3325 ACCTTTTGACTATTATATATCTTGCAAACATCTTGTAATCAGTCACTTGTCTCTTTATTTTATTTGGAGCGGCT 3398
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3399 TTCAACCTAGAGCAGTGGTCCCCAAACCCGGGGCTGCAGACTATTCCCTGTCTGTGGTTTGTTAAGAACCAGGC 3472
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3473 TACATAGCAGAAGATGAGTAGCAGGCGCGGGAGCATGACCACCTGAGCTCCGCCTCCTGTCAGACCAGCAGCGA 3546
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3547 CATTAGATTCTCATAGGAGCACAAACCCTACTGTGAACTGTGCGTATGAGGGATCTAGGTTGCACATTCCTTAA 3620
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3621 AAGACTCTTAATGCCTGATGATCTGAGGTGGAACAGGTTCACCCTGAAACCATCCCCCGCTCAGCCTGTGTCTG 3694
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3695 TGGAAAAATTGTCTTCCATGAAACTGGTCCCTGGTGCCAAAAAGGCTGGGGACTGCTGACCTACAAGATATATT 3768
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3769 AGTTATGACTCTTGGTGCATACTCTTGACAGAAATCCCACTCAACCTAGTATAATGCAGAGGACAGTTCACGGA 3842
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3843 GCAACTCAAATAATTGCCACTTTTACAATATTGAAGCTTCCTACGGGAAACATAATACATCTCTCAATTTATGT 3916
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3917 CCTTTAATACGATTAAACATTTTTCTTCATGTAGGTTCTCCAGAATTTTGGTTATGCCTATGCCTAGATTATTT 3990
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3991 ATGATTGTTGTTGGTATTGCAAATGTCCTCTCCTATTGATTATTTAATGGTATCTATGGAAAGTATTGATTTTT 4064
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4065 GTGTATTTGCTCTGTGCCCACTTGCCATCTAACTGGTTGTTATATTTTATTGAACCTTTCAAAGGATATGAATT 4138
Query 187 ----------------- 186
Sbjct 4139 ATGCTGATTTTAATGTC 4155
