Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_15487
Subject:
XR_925324.3
Aligned Length:
5845
Identities:
161
Gaps:
5660

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CGGCGGCGGGAAGATGGCGGCCTCCAGGAATGGGTTTGAAGCCGTGGAGGCAGAGGGCAGCGCAGGGTGCCGGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAAGCTCGGGAATGGAGGTGGTGCTTCCTTTGGATCCTGCCGTCCCCGCCCCGCTGTGCCCTCACGGACCCACT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTTCTGTTTGTAAAGGTGACCCAAGGGAAAGAAGAAACTCGGAGGTTTTATGCCTGTTCAGCCTGTAGAGATAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAAAGACTGTAATTTTTTTCAGTGGGAAGATGAAAAGTTGTCAGGAGCTAGACTTGCTGCCCGAGAAGCTCATA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACCGAAGATGTCAGCCTCCCCTGTCCCGAACGCAGTGTGTGGAAAGGTACTTGAAGTTTATTGAGTTGCCCTTG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ACTCAGAGAAAGTTTTGTCAAACATGTCAGCAGTTGTTGTTACCAGATGACTGGGGGCAACATAGTGAGCATCA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GGTTCTGGGTAATGTGTCCATTACCCAGTTAAGAAGGCCCAGTCAACTCCTTTATCCACTGGAAAACAAGAAGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CAAATGCCCAGTATCTGTTTGCTGATCGGAGCTGTCAGTTCTTGGTAGACTTACTTTCTGCCCTCGGATTCAGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGAGTACTGTGTGTTGGAACACCAAGGTTGCATGAGCTGATCAAGTTGACAGCATCAGGTGACAAGAAGTCTAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CATTAAAAGCCTTTTATTGGATATTGATTTTCGGTATTCACAGTTTTATATGGAAGATAGCTTTTGCCATTATA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ATATGTTTAACCATCATTTCTTTGATGGAAAGACTGCCCTTGAAGTATGCAGAGCATTTTTACAGGAAGATAAA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GGCGAAGGAATCATTATGGTGACGGATCCTCCGTTTGGTGGCTTGGTTGAACCTCTGGCTATTACATTCAAGAA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTTAATTGCTATGTGGAAAGAAGGTCAAAGCCAAGATGACAGTCACAAAGAACTACCCATTTTCTGGATTTTCC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CCTATTTTTTTGAATCCCGAATTTGTCAGTTTTTTCCAAGCTTCCAGATGCTGGATTACCAGGCTATTCCCTTC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TTTTTGGACTACAGGTTGTTTTTACCTTTTAAGGTAGATTATGATAATCATGCACTTTATAAACACGGAAAGAC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AGGTCGAAAACAGTCTCCCGTGCGTATTTTCACCAACATTCCGCCCAACAAAATAATCCTTCCTACTGAAGAAG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GGTACAGATTTTGCTCTCCGTGTCAACGGTATGTTTCTCTAGAGAATCAACACTGTGAGCTCTGTAATTCTTGC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ACATCCAAGGATGGCAGGAAATGGAACCATTGCTTTCTCTGTAAAAAGTGTGTAAAGCCTTCCTGGATCCACTG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TAGCATCTGCAATCACTGTGCTGTTCCAGATCATTCTTGTGAGGGCCCCAAACATGGCTGCTTTATTTGTGGTG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AACTGGATCATAAACGCAGTACTTGTCCTAACATTGCTACATCTAAGAGAGCTAACAAGTCAGTCGAATACTTT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ACTAGAAAAATGTATTCCATCTGTGTTTTATACAGGATAATCCACAAAAGCATGCAACATTCAGAGGATCTTGA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AGTGCCAAGTTAATTGTCACTTTCACTATTAAGTACTGGCTGCATAGATGGATGGAGGGAGGAGAGGAAGATGA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TTCAAAGAGCTTGCTTTCAAAGAGCTTACAGTTCTACAGCTTAGAGATGAAAATAACCAAAATATGAGAGCTGT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CAGAAAGCAGAAGCAAAGAAAAAGTAATAAGATGAAAATGGAGACCACGAAAGGACAATCCATGAATCATACAT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CTGCTACAAGGAGAAAGAAAAGGAGGGAAAGAGCCCATCAATATCTTGGCTCTTAAATGTCCAGTGACTGGAGA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  ATAAGAAAGATTTATGGTCCAACCTTTGATGCCATTTTCTGAAAGTGCCACACTGGACTTAAATTCAGCTGCTT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CCAGAGGTGTGCACCTTTCTGAGCTAGATAACAGGCAGGTGGCATTTGCTGGTTTACAGTCCCTTATCTGCCTC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TCTGGAGACATGGGGAGTTGTTCCATCTTCAGCCAGTTTACTAGTTCTTTCAGCATTCATTTTTCCTCACTTTA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  AGTCTCTCCCAGTCACATTGTTCTATTTTTATGTTTTCATTTTTTTTGAGATGGAGTCTTGCTCTGTCTCCCAG  2146

Query    1  ------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGTTCAAGCGATTCTCGTGCCTCGG  68
                  .||||.||||.|.|.|||||||||||||||||||...|||||.|||||||||.||||||.|||||..|
Sbjct 2147  GCTAGAGTGCAATGGCACAACCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTTAG  2220

Query   69  CCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTAC-ACTCAACTAATTTTTGTATTTTTAGGAGAGACGGG  141
            ||||||||||||||||.||||.||||...||||||.|| ||| ..|||||||||||||||||||.|||||||||
Sbjct 2221  CCTCCTGAGTAGCTGGAATTATAGGCACATGCCACCACGACT-GGCTAATTTTTGTATTTTTAGTAGAGACGGG  2293

Query  142  GTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG-----------------------------  186
            ||||||||.||||||||||||||||||||||||||||.|||||||                             
Sbjct 2294  GTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAAGTGATTTGCCTGCCTTGGCCTCCCAAAGTG  2367

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2368  CTGGGATTACAGGCATGAGCCACCTCACCCAGCTCCGGTCACATTATTCTAGCCTTTTTATCCAAAAAATGGGC  2441

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2442  AGACCATTCTTTTGCAGAAGATGTCAGAAGAAAATGAAAGTGAAAACCTATGCAGTTTGTTTACCGTGAACATA  2515

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2516  AAAGTATGTTAATTTAAATAGGAAAATATTTTATGTTAAATATGAAACAATAGTTTAAACCCCACTTGAAAAGT  2589

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2590  ATAGCGTACAATTATTTTTAGACTGAATTTGAAGATGATGGAAAGGGTTTTTACAAAGGCACTGTTTAGATATA  2663

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2664  CAGATTATAATTATAATTACATTATTATTAAATATTTATTCTTCAAGTACTTTTTGCAGTTGTCCTCTGACGGT  2737

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2738  CTAGAATCACTTAAATGCTTGTTGAATGAGTGAGATGTTTAGAACTACGACTTGCTCTGTCATTCCAGTGTCGT  2811

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2812  TTAACCTATGCAGTAAGATTCTGTCTTTGTAAAAGTAGTTCGTAGCAGAAGCCAGGATAGTTTGGTAATTAAAC  2885

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2886  GCCCAAACTAAACTCCTCATTCCTACCCTTAATATTTCCTGGCTGTATGATCTTGGCCAGGTCACTCTCTAAAA  2959

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2960  GCCCCGGTTTCTTCATTATTATCATTATTATAATGGGGAGAATAACAGCTATACCTGAGGTTTGTTTTGTGATT  3033

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3034  AAATTAAATGAGACCCAAGTGCTTGGCTCTCAGTTCTCCTCTGTCATTGGTGTGTTAGGTTAACAATGAAGATT  3107

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3108  GTTACTGGGTCTAATGGTAATTACCTTTTGGCCTGATAACAAAGCATTGAAGGCAGTAATTTGAACTCCCAGAA  3181

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3182  CAAACAGTTCATCTCCCCGTTTCTGTGCTAGTTATTGTCTCCTTAAGACTGAATTGTTTTGAATGACTTATATT  3255

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3256  TGCATAATGACTTTTCTCTTGTTTCCAAACAACTGCTGTAGAGCAGATTTGAAGGCATCTTTGTTTGGGGTTAG  3329

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3330  GCAGAGCCCTGTAAGTAAGGGTGGAGGAACTGCACTCTATCTGGTATTTAAATTCCAGGTAAGTTAGGACTGAT  3403

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3404  GCCTGGTGTAGAATGCTCAAGTGTGGCCCAGATCAGTGTGGCAGTGGTGTACATCAGTTGATGTCAAAAGATGA  3477

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3478  GTTATACCCCTGGACTTCATAAGCATCAGAAAGCTCTTCTCCCTTTTGTTACATGGAGGGCTATGATAGGAGGG  3551

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3552  GCACATTTGGAGGTGACTGGGTGAGATATGAAGTTTGTAAAACCGTTGTGAGAGTTCCCCTCTCTGATTCAAGC  3625

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3626  AAGGATAGGGACATTGCCTGACTTTATGGTGTTCACCATTCCATGATAAAATCTATTGAAATCTCCTCTGAAAC  3699

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3700  TAAGACACCTGAGGGACTATGACTACTGAAAAATTGAGTTCTGAAGGCCAACAGTTATTCTCATCACTATATTG  3773

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3774  CCTTAATGTTAAGATACCATCAATTATAAAATACATCATTGATTTTATCATAGCTTTTCAGGGGGAGAAGAGAA  3847

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3848  ATAATACTTCATTAATTAATTTTTAGATCATCTGATTTCAGAAATACTGAAATGCAAAAAAAAAAAAAATCTTA  3921

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3922  GAATTGAGGAAATAGTTATAATCAGGAATAATGTACTTATTTATTTTGAGACAGAGTCTTGCTTTGTTGGACAG  3995

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3996  GCTGGAATGCAGTGGTGGGATCTCTGCTCACCGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTTGTGCCTCAG  4069

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4070  CCTCCCTGGTAGCTGGGATTATGGGTGTGTGCCACCACACCCGGCTAATTTTTATATTTTTGTAGAGACTGGGT  4143

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4144  TTCGCCATGTTGGCCAGGCGAGTCTCAAACTCCTCATCTCAGGTGATCTGCCCGCCTCAGCTTCCCAAAGTGCT  4217

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4218  GGGATTACAGACGTGAGCCACCACACCCAGCCAGGAATAATGTACTTTAAAACTTTATTACTGTCTTAGAAAGT  4291

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4292  TAAAAATAGGAAATTTGGTGATTTTACACTTATATTCAATTAATACTAATTTTAAGGACTTAATCTCTATTCCT  4365

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4366  TTTTCAGAGAATAAACTAATTGGTAGCCTGTAAAAATGTGTCTCTGGGAGGTAGAATGTGAAGCGGGATGAGGT  4439

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4440  CATTTGTTCTTAATAGAAATCTGAACATCTTAACATTAAGATACCTTCTCAAAATAGCAATAGAAGAAAATCCC  4513

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4514  TAAAATTTGACAGATAACATTTTCTAAGCTTTTTAAAAGGACATTTTTAATAAATACAGCTAAATTTCATTCTT  4587

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4588  CTTATATTATGAAATTTAATGAGAAACAAAGTCTTTTTGTAGGCTGGATTTCATGTTTTTTCCTAATTAGTCCA  4661

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4662  GTACCTAGACTAGTTTATCACTCCATATGCCCCATTCTTTTCATCCGATACTGTTCTTTCTGCTTGGAATATGT  4735

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4736  CCCTCCATGTGGCCACTCCGTTCTCTTTTGGGAATCTTCCACGAGTCCCTGATACTGAAACCTTCTTTGGCCCC  4809

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4810  TTGGTGTTTGATACCACATTTAAGGCCTTTCACATATTATTCTGTGATTATTTTTACTGATTTTATTTCCCTCA  4883

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4884  AAGATTTAGGTCTCTTAATGTCAGCACCCATTTCATCTGCTCTTGTGTATCTTGTGCCTTTTTGGTGCTCAATA  4957

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4958  AAAATTTGATGTAAGCATGGAATTTTCTAGAGGCTTTGAAGTGGTAGGCATGCCTGAAATACGGACTGGACCCA  5031

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 5032  CTCTATTATGTTTCTTCTAGGGACTGAAAAGGGAAACAGATTTGTATTAGGAGGCACTTAGAGTCAATATGAGG  5105

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 5106  ACCACCCTAACTGAAGTTTTAAATGTGGGGATGTGCTGCGTGAAGATTAGTAGCCTTGTAGCAGGATGAGCCGT  5179

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 5180  GGACAAAACCCCACAGACACCAAGATAGTGAAGGAAGTAGCTTTTAATCAGTTGGAAGCATCGACAGTCTAGTG  5253

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 5254  TCTTAAAATCCGAGTTTGTTGAGTGCACAATTTCTGTCCCTTTTAAGGGCTCACAACACTAAAGATTTTACATG  5327

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 5328  ACAGGGCCGTGATCGATTGAGCAATCTAGGGGGTATGTGACAGGGGCTGCATGCACCGGTAATCAGAGTGAAAC  5401

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 5402  AACAGAACGAGAAGTTTCACAATGTCCTTCCATACAATGTCTGGAATCTACGGATAACATCGGTTGCTAGGTCA  5475

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 5476  TGGGTTGAATTTTAACTATCAGGCTAAGGTCAGGCAGGCCCAGGCCTGGTTTTGGGTCTGGTGCCTGGCACCCG  5549

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 5550  GCTGCCTGCCTTTGGTTTTGCTTCCTTGTTTCTTAAAACAGGTACTGAGCATAAAACAATATAGAACAATACGG  5623

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 5624  GGGGGGATCTCTTTCTCTCTTCTCTCAGCTTTATCTGCAAGACCCCTTCAAAGTAATCTGCAAAATACTAGGCA  5697

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 5698  TCTGGGAGAAGTTTGACTAATCTTGAAATATAAAATCACAACCTACAAAGGGTCCTGGTCAGCTGCCACTGCCT  5771

Query  187  -------------------------------------------------------------------------  186
                                                                                     
Sbjct 5772  TCACAATGTCCCTGTTGGTCTCTCCACTGGAGTAGTACATCTGTTGCCAGAGAAATAAAAATGTCAGTTTGTG  5844

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