Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15487
- Subject:
- XR_925324.3
- Aligned Length:
- 5845
- Identities:
- 161
- Gaps:
- 5660
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGGCGGCGGGAAGATGGCGGCCTCCAGGAATGGGTTTGAAGCCGTGGAGGCAGAGGGCAGCGCAGGGTGCCGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAAGCTCGGGAATGGAGGTGGTGCTTCCTTTGGATCCTGCCGTCCCCGCCCCGCTGTGCCCTCACGGACCCACT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTTCTGTTTGTAAAGGTGACCCAAGGGAAAGAAGAAACTCGGAGGTTTTATGCCTGTTCAGCCTGTAGAGATAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAAAGACTGTAATTTTTTTCAGTGGGAAGATGAAAAGTTGTCAGGAGCTAGACTTGCTGCCCGAGAAGCTCATA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACCGAAGATGTCAGCCTCCCCTGTCCCGAACGCAGTGTGTGGAAAGGTACTTGAAGTTTATTGAGTTGCCCTTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACTCAGAGAAAGTTTTGTCAAACATGTCAGCAGTTGTTGTTACCAGATGACTGGGGGCAACATAGTGAGCATCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGTTCTGGGTAATGTGTCCATTACCCAGTTAAGAAGGCCCAGTCAACTCCTTTATCCACTGGAAAACAAGAAGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CAAATGCCCAGTATCTGTTTGCTGATCGGAGCTGTCAGTTCTTGGTAGACTTACTTTCTGCCCTCGGATTCAGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGAGTACTGTGTGTTGGAACACCAAGGTTGCATGAGCTGATCAAGTTGACAGCATCAGGTGACAAGAAGTCTAA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CATTAAAAGCCTTTTATTGGATATTGATTTTCGGTATTCACAGTTTTATATGGAAGATAGCTTTTGCCATTATA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATATGTTTAACCATCATTTCTTTGATGGAAAGACTGCCCTTGAAGTATGCAGAGCATTTTTACAGGAAGATAAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GGCGAAGGAATCATTATGGTGACGGATCCTCCGTTTGGTGGCTTGGTTGAACCTCTGGCTATTACATTCAAGAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTTAATTGCTATGTGGAAAGAAGGTCAAAGCCAAGATGACAGTCACAAAGAACTACCCATTTTCTGGATTTTCC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CCTATTTTTTTGAATCCCGAATTTGTCAGTTTTTTCCAAGCTTCCAGATGCTGGATTACCAGGCTATTCCCTTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTTTTGGACTACAGGTTGTTTTTACCTTTTAAGGTAGATTATGATAATCATGCACTTTATAAACACGGAAAGAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGGTCGAAAACAGTCTCCCGTGCGTATTTTCACCAACATTCCGCCCAACAAAATAATCCTTCCTACTGAAGAAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GGTACAGATTTTGCTCTCCGTGTCAACGGTATGTTTCTCTAGAGAATCAACACTGTGAGCTCTGTAATTCTTGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACATCCAAGGATGGCAGGAAATGGAACCATTGCTTTCTCTGTAAAAAGTGTGTAAAGCCTTCCTGGATCCACTG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TAGCATCTGCAATCACTGTGCTGTTCCAGATCATTCTTGTGAGGGCCCCAAACATGGCTGCTTTATTTGTGGTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AACTGGATCATAAACGCAGTACTTGTCCTAACATTGCTACATCTAAGAGAGCTAACAAGTCAGTCGAATACTTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ACTAGAAAAATGTATTCCATCTGTGTTTTATACAGGATAATCCACAAAAGCATGCAACATTCAGAGGATCTTGA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AGTGCCAAGTTAATTGTCACTTTCACTATTAAGTACTGGCTGCATAGATGGATGGAGGGAGGAGAGGAAGATGA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTCAAAGAGCTTGCTTTCAAAGAGCTTACAGTTCTACAGCTTAGAGATGAAAATAACCAAAATATGAGAGCTGT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAGAAAGCAGAAGCAAAGAAAAAGTAATAAGATGAAAATGGAGACCACGAAAGGACAATCCATGAATCATACAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CTGCTACAAGGAGAAAGAAAAGGAGGGAAAGAGCCCATCAATATCTTGGCTCTTAAATGTCCAGTGACTGGAGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ATAAGAAAGATTTATGGTCCAACCTTTGATGCCATTTTCTGAAAGTGCCACACTGGACTTAAATTCAGCTGCTT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCAGAGGTGTGCACCTTTCTGAGCTAGATAACAGGCAGGTGGCATTTGCTGGTTTACAGTCCCTTATCTGCCTC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TCTGGAGACATGGGGAGTTGTTCCATCTTCAGCCAGTTTACTAGTTCTTTCAGCATTCATTTTTCCTCACTTTA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AGTCTCTCCCAGTCACATTGTTCTATTTTTATGTTTTCATTTTTTTTGAGATGGAGTCTTGCTCTGTCTCCCAG 2146
Query 1 ------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGTTCAAGCGATTCTCGTGCCTCGG 68
.||||.||||.|.|.|||||||||||||||||||...|||||.|||||||||.||||||.|||||..|
Sbjct 2147 GCTAGAGTGCAATGGCACAACCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTTAG 2220
Query 69 CCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTAC-ACTCAACTAATTTTTGTATTTTTAGGAGAGACGGG 141
||||||||||||||||.||||.||||...||||||.|| ||| ..|||||||||||||||||||.|||||||||
Sbjct 2221 CCTCCTGAGTAGCTGGAATTATAGGCACATGCCACCACGACT-GGCTAATTTTTGTATTTTTAGTAGAGACGGG 2293
Query 142 GTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG----------------------------- 186
||||||||.||||||||||||||||||||||||||||.|||||||
Sbjct 2294 GTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAAGTGATTTGCCTGCCTTGGCCTCCCAAAGTG 2367
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2368 CTGGGATTACAGGCATGAGCCACCTCACCCAGCTCCGGTCACATTATTCTAGCCTTTTTATCCAAAAAATGGGC 2441
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2442 AGACCATTCTTTTGCAGAAGATGTCAGAAGAAAATGAAAGTGAAAACCTATGCAGTTTGTTTACCGTGAACATA 2515
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2516 AAAGTATGTTAATTTAAATAGGAAAATATTTTATGTTAAATATGAAACAATAGTTTAAACCCCACTTGAAAAGT 2589
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2590 ATAGCGTACAATTATTTTTAGACTGAATTTGAAGATGATGGAAAGGGTTTTTACAAAGGCACTGTTTAGATATA 2663
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2664 CAGATTATAATTATAATTACATTATTATTAAATATTTATTCTTCAAGTACTTTTTGCAGTTGTCCTCTGACGGT 2737
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2738 CTAGAATCACTTAAATGCTTGTTGAATGAGTGAGATGTTTAGAACTACGACTTGCTCTGTCATTCCAGTGTCGT 2811
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2812 TTAACCTATGCAGTAAGATTCTGTCTTTGTAAAAGTAGTTCGTAGCAGAAGCCAGGATAGTTTGGTAATTAAAC 2885
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2886 GCCCAAACTAAACTCCTCATTCCTACCCTTAATATTTCCTGGCTGTATGATCTTGGCCAGGTCACTCTCTAAAA 2959
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2960 GCCCCGGTTTCTTCATTATTATCATTATTATAATGGGGAGAATAACAGCTATACCTGAGGTTTGTTTTGTGATT 3033
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3034 AAATTAAATGAGACCCAAGTGCTTGGCTCTCAGTTCTCCTCTGTCATTGGTGTGTTAGGTTAACAATGAAGATT 3107
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3108 GTTACTGGGTCTAATGGTAATTACCTTTTGGCCTGATAACAAAGCATTGAAGGCAGTAATTTGAACTCCCAGAA 3181
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3182 CAAACAGTTCATCTCCCCGTTTCTGTGCTAGTTATTGTCTCCTTAAGACTGAATTGTTTTGAATGACTTATATT 3255
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3256 TGCATAATGACTTTTCTCTTGTTTCCAAACAACTGCTGTAGAGCAGATTTGAAGGCATCTTTGTTTGGGGTTAG 3329
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3330 GCAGAGCCCTGTAAGTAAGGGTGGAGGAACTGCACTCTATCTGGTATTTAAATTCCAGGTAAGTTAGGACTGAT 3403
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3404 GCCTGGTGTAGAATGCTCAAGTGTGGCCCAGATCAGTGTGGCAGTGGTGTACATCAGTTGATGTCAAAAGATGA 3477
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3478 GTTATACCCCTGGACTTCATAAGCATCAGAAAGCTCTTCTCCCTTTTGTTACATGGAGGGCTATGATAGGAGGG 3551
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3552 GCACATTTGGAGGTGACTGGGTGAGATATGAAGTTTGTAAAACCGTTGTGAGAGTTCCCCTCTCTGATTCAAGC 3625
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3626 AAGGATAGGGACATTGCCTGACTTTATGGTGTTCACCATTCCATGATAAAATCTATTGAAATCTCCTCTGAAAC 3699
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3700 TAAGACACCTGAGGGACTATGACTACTGAAAAATTGAGTTCTGAAGGCCAACAGTTATTCTCATCACTATATTG 3773
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3774 CCTTAATGTTAAGATACCATCAATTATAAAATACATCATTGATTTTATCATAGCTTTTCAGGGGGAGAAGAGAA 3847
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3848 ATAATACTTCATTAATTAATTTTTAGATCATCTGATTTCAGAAATACTGAAATGCAAAAAAAAAAAAAATCTTA 3921
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3922 GAATTGAGGAAATAGTTATAATCAGGAATAATGTACTTATTTATTTTGAGACAGAGTCTTGCTTTGTTGGACAG 3995
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3996 GCTGGAATGCAGTGGTGGGATCTCTGCTCACCGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTTGTGCCTCAG 4069
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4070 CCTCCCTGGTAGCTGGGATTATGGGTGTGTGCCACCACACCCGGCTAATTTTTATATTTTTGTAGAGACTGGGT 4143
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4144 TTCGCCATGTTGGCCAGGCGAGTCTCAAACTCCTCATCTCAGGTGATCTGCCCGCCTCAGCTTCCCAAAGTGCT 4217
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4218 GGGATTACAGACGTGAGCCACCACACCCAGCCAGGAATAATGTACTTTAAAACTTTATTACTGTCTTAGAAAGT 4291
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4292 TAAAAATAGGAAATTTGGTGATTTTACACTTATATTCAATTAATACTAATTTTAAGGACTTAATCTCTATTCCT 4365
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4366 TTTTCAGAGAATAAACTAATTGGTAGCCTGTAAAAATGTGTCTCTGGGAGGTAGAATGTGAAGCGGGATGAGGT 4439
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4440 CATTTGTTCTTAATAGAAATCTGAACATCTTAACATTAAGATACCTTCTCAAAATAGCAATAGAAGAAAATCCC 4513
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4514 TAAAATTTGACAGATAACATTTTCTAAGCTTTTTAAAAGGACATTTTTAATAAATACAGCTAAATTTCATTCTT 4587
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4588 CTTATATTATGAAATTTAATGAGAAACAAAGTCTTTTTGTAGGCTGGATTTCATGTTTTTTCCTAATTAGTCCA 4661
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4662 GTACCTAGACTAGTTTATCACTCCATATGCCCCATTCTTTTCATCCGATACTGTTCTTTCTGCTTGGAATATGT 4735
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4736 CCCTCCATGTGGCCACTCCGTTCTCTTTTGGGAATCTTCCACGAGTCCCTGATACTGAAACCTTCTTTGGCCCC 4809
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4810 TTGGTGTTTGATACCACATTTAAGGCCTTTCACATATTATTCTGTGATTATTTTTACTGATTTTATTTCCCTCA 4883
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4884 AAGATTTAGGTCTCTTAATGTCAGCACCCATTTCATCTGCTCTTGTGTATCTTGTGCCTTTTTGGTGCTCAATA 4957
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4958 AAAATTTGATGTAAGCATGGAATTTTCTAGAGGCTTTGAAGTGGTAGGCATGCCTGAAATACGGACTGGACCCA 5031
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5032 CTCTATTATGTTTCTTCTAGGGACTGAAAAGGGAAACAGATTTGTATTAGGAGGCACTTAGAGTCAATATGAGG 5105
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5106 ACCACCCTAACTGAAGTTTTAAATGTGGGGATGTGCTGCGTGAAGATTAGTAGCCTTGTAGCAGGATGAGCCGT 5179
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5180 GGACAAAACCCCACAGACACCAAGATAGTGAAGGAAGTAGCTTTTAATCAGTTGGAAGCATCGACAGTCTAGTG 5253
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5254 TCTTAAAATCCGAGTTTGTTGAGTGCACAATTTCTGTCCCTTTTAAGGGCTCACAACACTAAAGATTTTACATG 5327
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5328 ACAGGGCCGTGATCGATTGAGCAATCTAGGGGGTATGTGACAGGGGCTGCATGCACCGGTAATCAGAGTGAAAC 5401
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5402 AACAGAACGAGAAGTTTCACAATGTCCTTCCATACAATGTCTGGAATCTACGGATAACATCGGTTGCTAGGTCA 5475
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5476 TGGGTTGAATTTTAACTATCAGGCTAAGGTCAGGCAGGCCCAGGCCTGGTTTTGGGTCTGGTGCCTGGCACCCG 5549
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5550 GCTGCCTGCCTTTGGTTTTGCTTCCTTGTTTCTTAAAACAGGTACTGAGCATAAAACAATATAGAACAATACGG 5623
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5624 GGGGGGATCTCTTTCTCTCTTCTCTCAGCTTTATCTGCAAGACCCCTTCAAAGTAATCTGCAAAATACTAGGCA 5697
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5698 TCTGGGAGAAGTTTGACTAATCTTGAAATATAAAATCACAACCTACAAAGGGTCCTGGTCAGCTGCCACTGCCT 5771
Query 187 ------------------------------------------------------------------------- 186
Sbjct 5772 TCACAATGTCCCTGTTGGTCTCTCCACTGGAGTAGTACATCTGTTGCCAGAGAAATAAAAATGTCAGTTTGTG 5844
