Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_15784
Subject:
NM_053186.3
Aligned Length:
2205
Identities:
871
Gaps:
1206

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCGGCGGCTGCTGCGGCTGTGGTGGGTTGGTTGGGCTGGGTGCTTGCCGCGTTCTGTCTGGGCAGCACCGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGGGGAGGCGGCGCCGGCGCCGGGCGCGGGACTGCTGAACTTCTGCACGGAAGAGGACAGCGCACCGGGCGCGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCTCCCTGCGCGGAAGGGCAGCGCCAGAGGCCACTTTGTGCTTGCGACTCTTCTGCTCCGGCTTGGCCAACAGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCCTGGACCTGGGTAGCCGCCGAGGGCGCAGGCTGCCCGGAGGGCGGACGGGCCACGGAGCCCGAGGAGGCGGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CGCCCCGACGGGCGAGTGGCGCGCGCTGCTGCGCCTGCGCGCCGAGGCCGGCCACCCGCGCTCCGCGCTGCTGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CGGTGCGCGTGGAGCCGGGTGGTGGGGCCGCGGAGGAGGCGGCGCCGCCCTGGGCGCTGGGGCTGGGGGCGGCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GGGCTGCTGGCCCTGGCGGCGGTGGCGCGCGGCCTGCAGCTGAGCGCGCTGGCGCTGGCGCCGGCCGAGGTGCA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGTGCTGCGCGAGAGCGGCTCGGAGGCGGAGCGCGCGGCGGCGCGGCGCCTGGAACCCGCGCGGCGCTGGGCCG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCTGCGCCCTGGGCGCGCTGCTGCTTCTGGCCAGCCTGGCGCAGGCGGCACTGGCCGTGCTGCTGTACGGGGCG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GCGGGCCAGCGCGCCGTGCCCGCCGTGCTGGGTTGCGCGGGGCTGGTGTTCCTGGTGGGTGAGGTGCTGCCGGC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CGCCGTGAGCGGACGCTGGGCGCTGGCGCTGGCGCCGCGCGCGTTGGGCCTCAGCCGCCTGGCGGTGCTGCTCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CCTTGCCCGTGGCGCTGCCGGTCGGGCAGCTGCTGGAGCTGGCAGCGCGGCCGGGGCGTCTGCGGGAGCGCGTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTGGAGCTGGCGCGCGGCGGCGGCGACCCCTACAGCGACCTCAGCAAGGGAGTGCTGCGCTCCCGGACCGTGGA  962

Query    1  -------------------------------ATGCTGGACGCCAGCACCGTGCTGGACTTCGGCGTCCTGGCCA  43
                                           |||||||||.||.||||.||.||.||||||.|||||||.||||
Sbjct  963  GGACGTGCTCACGCCGCTCGAAGACTGCTTTATGCTGGACTCCGGCACTGTCCTAGACTTCAGCGTCCTCGCCA  1036

Query   44  GCATCATGCAGAGCGGCCACACGCGCATCCCGGTGTACGAGGAGGAGCGCTCCAACATCGTGGACATGCTCTAC  117
            |||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GCATCATGCAGAGCGGCCACACGCGCATCCCAGTGTACGAGGAGGAGCGCTCCAACATCGTGGACATGCTCTAC  1110

Query  118  CTCAAGGACTTGGCCTTCGTGGATCCCGAAGACTGCACGCCGCTCAGCACCATCACTCGTTTCTACAACCATCC  191
            |||||.||||||||..||||.||.|||||.||||||||.|||||||||||||||||.||.||||||||||||||
Sbjct 1111  CTCAAAGACTTGGCTATCGTTGAGCCCGAGGACTGCACACCGCTCAGCACCATCACCCGCTTCTACAACCATCC  1184

Query  192  GCTCCACTTCGTCTTCAACGACACCAAGCTGGACGCTGTCCTGGAGGAATTCAAGCGAGG--------------  251
            .||||||||.|||||||||||.|||||.||||||||||||||||||||.|||||||||||              
Sbjct 1185  ACTCCACTTTGTCTTCAACGATACCAAACTGGACGCTGTCCTGGAGGAGTTCAAGCGAGGCAAGTCCCACCTGG  1258

Query  252  ---------AGA----------------------------------------------------CACCGTGGTG  264
                     |||                                                    ||||.|||.|
Sbjct 1259  CCATTGTGCAGAAGGTGAACAATGAGGGCGAGGGCGACCCCTTCTACGAGGTGCTGGGCCTGGTCACCCTGGAG  1332

Query  265  AA-------GAGG--------AAGCCTG----CTT------CTCTGATG-------------------------  288
            .|       ||||        |||.|||    |||      .|||||.|                         
Sbjct 1333  GACGTCATCGAGGAGATCATCAAGTCTGAGATCTTGGATGAGTCTGAAGACTACTCAGACACAAAGGTGAGGAA  1406

Query  289  -------------------GCCCCTCTGAAGCGGAAGGAGGAGTTCTCCTTGTTCAAGGTGTCTGATGATGAAT  343
                               ||.|||||.|||||.||||||||.||||||||.||||||||||||||||||||||
Sbjct 1407  GAAGACCGTCGCCCTGGGAGCTCCTCTCAAGCGAAAGGAGGAATTCTCCTTATTCAAGGTGTCTGATGATGAAT  1480

Query  344  ATAAAGTAACAATCTCGCCTCAGCTGCTCTTGGCCACCCAGCGCTTCCTGTCCCGAGAAGTGGATGTATTCAGC  417
            |||||||||.|||||||||||||||||||.|||||||||||||||||||.||||||||.||||||||.||||||
Sbjct 1481  ATAAAGTAAAAATCTCGCCTCAGCTGCTCCTGGCCACCCAGCGCTTCCTTTCCCGAGAGGTGGATGTGTTCAGC  1554

Query  418  CCGCTGCGCATCTCTGAGAAGGTCCTGCTGCACCTGTTGAAGCATCCCAGTGTCAACCAGGAAGTGAGGTTTGA  491
            ||..||||..||||||||||.|||.|||||||||||.|||||||||||||||||||||||||.||||.||||||
Sbjct 1555  CCATTGCGAGTCTCTGAGAAAGTCTTGCTGCACCTGCTGAAGCATCCCAGTGTCAACCAGGAGGTGACGTTTGA  1628

Query  492  CGAGAGCAACCGGCTGGCCACACACCACTACCTGTACCAGCGCAGCCAGCCGGTGGATTACTTCATTCTCATCC  565
            ||||||||||||.||||||.|||||||.||.||||||||||||||||||||.||.|||||||||||||||||.|
Sbjct 1629  CGAGAGCAACCGCCTGGCCGCACACCATTATCTGTACCAGCGCAGCCAGCCAGTAGATTACTTCATTCTCATTC  1702

Query  566  TGCAGGGCAGGGTTGAAGTGGAGATCGGGAAAGAGGGTCTGAAGTTTGAGAATGGGGCCTTCACGTACTATGGA  639
            ||||||||||.||.||.||.||.||.|||||||||||.||||||||.|||||.|||||||||||||||||||||
Sbjct 1703  TGCAGGGCAGAGTCGAGGTCGAAATTGGGAAAGAGGGCCTGAAGTTCGAGAACGGGGCCTTCACGTACTATGGA  1776

Query  640  GTGTCGGCCCTAACTGTGCCATCCTCGGTTCACCAGTCCCCGGTGTCCTCGCTCCAGCCCATCCGCCATGACCT  713
            |||||.|||||.||.|..||||||||.|.||||||||||||.|||||.||.|.|||||.|||||||||||||.|
Sbjct 1777  GTGTCCGCCCTGACAGCCCCATCCTCAGCTCACCAGTCCCCAGTGTCTTCACGCCAGCTCATCCGCCATGACGT  1850

Query  714  GCAGCCCGACCCAGGTGACGGCACGCATTCATCTG--CGTATTGTCCCGACTACACCGTGAGGGCGCTCTCTGA  785
            ||||||.||.||||..||.||.||.|..||  |||  |.||.|||||.||||||||.||||||||.||.||.||
Sbjct 1851  GCAGCCTGAACCAGCCGATGGTACCCGCTC--CTGCACATACTGTCCTGACTACACTGTGAGGGCCCTTTCCGA  1922

Query  786  TCTGCAGCTCATCAAGGTTACGCGACTGCAGTACCTCAATGCACTCCTGGCTACCCGAGCCCAGAACCTGCCAC  859
            .|||||||||||.|||||.||.||.|||||||||||.||||||||||||||||||||||||||.|.|.||||.|
Sbjct 1923  CCTGCAGCTCATTAAGGTCACACGGCTGCAGTACCTTAATGCACTCCTGGCTACCCGAGCCCAAAGCTTGCCTC  1996

Query  860  AGTCCCCTGAGAACACCGACCTGCAGGTTATTCCAGGCAGCCAGACCAGGCTCCTTGGTGAGAAGACCACCACA  933
            ..|||||.||||||.|.||.||.||||.|||.|||||||||||||||||||||||||||||.|||.||| .|.|
Sbjct 1997  CATCCCCAGAGAACGCTGAGCTCCAGGCTATCCCAGGCAGCCAGACCAGGCTCCTTGGTGACAAGTCCA-GAGA  2069

Query  934  G-CGGCAGGGTCCAGCCACAGCAGGCCCAGCCTTCCCCTTCTCCCCCGGGGCAGGGACAGTGCGGCATATTCAG  1006
            | |.||||||||||.|.|||||||.||||||.|           |||.|.|.|||                   
Sbjct 2070  GACAGCAGGGTCCACCAACAGCAGACCCAGCAT-----------CCCAGTGGAGG-------------------  2113

Query 1007  ATTCAGACCTCTTTGGGCTGAGCCACCTTGTGAGTGCAGTTACTGCCTTTGTGTGGCCG  1065
                |||.|.|  |||||.||   |||..| |||||                       
Sbjct 2114  ----AGAGCCC--TGGGCGGA---ACCCAG-GAGTG-----------------------  2139

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