Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15784
- Subject:
- XR_001738700.2
- Aligned Length:
- 4698
- Identities:
- 1065
- Gaps:
- 3633
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAGCCTTTTCCTTTGGTCACTCACCACCAGCTTACTCATTTTTTTTTTTTTTTGCACATTACCTTCCACACAAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTTTACTTTGTGGCCACAATGTGCATACTTTTTTTGATTGTTACTTTCATGACATAGCAAATTGTTTCTATAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTCTTTATAAAGGTCATTTAAAATGACATGTGCAGTAAGTCAAAGTCTTCTTGTGCTAGGAAATTTGAAAAAAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAAAGTGTAGAGAAAAATACAAAAATTACTGAATCTGAACATCTATAGAGAAGTGTTGTTAGCAGTTGGTTTAT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTCCTTCCAATCACATACAGATCATATCTGATGGGTAAAGAATATTCCATACTGTCAACAGACCACACTGTCTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTAAAATCGCTTCAGCAGTGAGGATCCTCTGGAATAGATCTTGTTAATCCTGAGGAATTATTCTCCCAGCGGTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGCTATGAGAAGTGGAATCACCAGATGTAGTAATTCCTGACAGAACTGCCGCCTGCTTGTGTGGCTGAGATGCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GACCTAGGTATCAGGCTGGTCGCGCCGGAACCCAGCACCCACGCTGAGTCTTTCTGAGCTCCACTCTGCTCCTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTAGATATTAACCACCTGAGGTAGCTGTCCAGATTCAAGGCGGTAGTGATTTTGTGTGTCTGTGTATTTATCAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GGGGTCCGCGGCGGGAACGCAGGGGCTGTGTCCCACGTCCCCAAACCTCTAGTAGGGTACGGCGCGATGAACAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTCCATAAACCTTAAACCTCCCGGCGCTCAGTCACTGGTTCTTATTTCAGCCCTCTTAGCCCCGTAGGTCGGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCGCTGAAAACCTTTCTGGTACCTGGGGCCTTTCCTAAGAAAAAGGCACATGTCTCGCACATTTCAGTCTGGTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TGCAACTTCAGGCGCGCCAGCACCCGAGGTTCTTCCGACCGGCCGCTCCGCTCCCAAGCCGGGAACTTCCCAGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GAATTGGCTCGGCCTCCGGGCGCGGGGGACAGCATCGGGAGGAGTGGGACTCCGGGCGCCGCGCACGGGCCGAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GACAGCCGGGCTTGGGAGGCCCTGCCCGCCGCCCCGCGTCCTCCCGGCCACTGCCACCCCGCGCATCCGGAGCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCAGCAGACTCGGCGGGGCCCGGAGCCCCACGCCCCCGGCCCGCCCCTGGCCGCCACTTGTTTACTCCCCGGCG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CAGCCTAGTCCGACCCTGGGGCCCGCCCCCGCCCACCGCCTATTGGCCGAGGAGGCGCGAAGAGCCGTAACGAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGGCCCGGGGAGGCGCGGGGCGAGCGGGGTAGGCTGCGCGAGAGGCCGAGAGGGGGCAGCAGGCGATGGCGGCG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCGGTAGCTGCGGCGGGTCGGTTAGGCTGGTTGTTCGCCGCGCTCTGCCTGGGCAACGCCGCGGGGGAGGCCGC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GCCGGGCCCGCGAGTGCTGGGCTTCTGCCTGGAGGAGGATGGAGCGGCGGGCGCGGGTTGGGTACGCGGAGGGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CGGCGCGGGACACGCCGGACGCCACCTTCCTCCTGCGCCTCTTCGGCCCGGGCTTCGCCAACAGCTCTTGGTCC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TGGGTGGCCCCGGAGGGGGCGGGCTGCCGGGAGGAGGCGGCCTCCCCCGCGGGCGAGTGGCGCGCGCTGCTGCG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CTTGCGCCTGCGGGCCGAGGCCGTGCGCCCGCACTCGGCGCTGCTGGCGGTGCGCGTGGAGCCGGGTGGCGGGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CGGCTGAGGAGGCGGCGCCGCCCTGGGCTCTGGGCCTGGGGGCGGCCGGGCTGCTGGCGCTGGCAGCGCTGGCG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CGAGGCCTGCAGCTGAGCGCGCTGGCGCTGGCGCCTGCCGAGGTGCAGGTGCTGCGCGAGAGCGGCTCGGAGGC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GGAGCGTGCGGCGGCGCGGCGTTTGGAGCCCGCGCGGCGCTGGGCCGGCTGCGCCTTGGGCGCGCTGCTGCTGC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGGCCAGCCTGGCGCAGGCGGCGCTGGCGGTGCTGCTGTACCGCGCGGCCGGCCAGCGTGCGGTGCCCGCCGTG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTGGGCAGCGCGGGGCTCGTGTTCCTGGTGGGAGAGGTGGTGCCGGCCGCCGTGAGCGGGCGCTGGACGCTGGC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GCTGGCGCCGCGAGCGCTCGGCCTCAGCCGCCTGGCCGTCCTGCTCACTCTGCCCGTCGCGCTGCCCGTGGGGC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AGCTGCTGGAGCTGGCGGCGCGGCCCGGGCGGCTGCGGGAGCGGGTGCTGGAGCTGGCGCGCGGCGGCGGCGAC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CCCTACAGCGATCTCAGCAAGGGCGTGCTGCGCTGCCGGACCGTGGAGGACGTGCTCACGCCCCTCGAAGACTG 2294
Query 1 ----ATGCTGGACGCCAGCACCGTGCTGGACTTCGGCGTCCTGGCCAGCATCATGCAGAGCGGCCACACGCGCA 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 CTTCATGCTGGACGCCAGCACCGTGCTGGACTTCGGCGTCCTGGCCAGCATCATGCAGAGCGGCCACACGCGCA 2368
Query 71 TCCCGGTGTACGAGGAGGAGCGCTCCAACATCGTGGACATGCTCTACCTCAAGGACTTGGCCTTCGTGGATCCC 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 TCCCGGTGTACGAGGAGGAGCGCTCCAACATCGTGGACATGCTCTACCTCAAGGACTTGGCCTTCGTGGATCCC 2442
Query 145 GAAGACTGCACGCCGCTCAGCACCATCACTCGTTTCTACAACCATCCGCTCCACTTCGTCTTCAACGACACCAA 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 GAAGACTGCACGCCGCTCAGCACCATCACTCGTTTCTACAACCATCCGCTCCACTTCGTCTTCAACGACACCAA 2516
Query 219 GCTGGACGCTGTCCTGGAGGAATTCAAGCGAGGAGACACCGTGGTGAAGAGGAAGCCTGCTTCTCTGATGGCCC 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 GCTGGACGCTGTCCTGGAGGAATTCAAGCGAGGAGACACCGTGGTGAAGAGGAAGCCTGCTTCTCTGATGGCCC 2590
Query 293 CTCTGAAGCGGAAGGAGGAGTTCTCCTTGTTCAAGGTGTCTGATGATGAATATAAAGTAACAATCTCGCCTCAG 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 CTCTGAAGCGGAAGGAGGAGTTCTCCTTGTTCAAGGTGTCTGATGATGAATATAAAGTAACAATCTCGCCTCAG 2664
Query 367 CTGCTCTTGGCCACCCAGCGCTTCCTGTCCCGAGAAGTGGATGTATTCAGCCCGCTGCGCATCTCTGAGAAGGT 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 CTGCTCTTGGCCACCCAGCGCTTCCTGTCCCGAGAAGTGGATGTATTCAGCCCGCTGCGCATCTCTGAGAAGGT 2738
Query 441 CCTGCTGCACCTGTTGAAGCATCCCAGTGTCAACCAGGAAGTGAGGTTTGACGAGAGCAACCGGCTGGCCACAC 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 CCTGCTGCACCTGTTGAAGCATCCCAGTGTCAACCAGGAAGTGAGGTTTGACGAGAGCAACCGGCTGGCCACAC 2812
Query 515 ACCACTACCTGTACCAGCGCAGCCAGCCGGTGGATTACTTCATTCTCATCCTGCAGGGCAGGGTTGAAGTGGAG 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 ACCACTACCTGTACCAGCGCAGCCAGCCGGTGGATTACTTCATTCTCATCCTGCAGGGCAGGGTTGAAGTGGAG 2886
Query 589 ATCGGGAAAGAGGGTCTGAAGTTTGAGAATGGGGCCTTCACGTACTATGGAGTGTCGGCCCTAACTGTGCCATC 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 ATCGGGAAAGAGGGTCTGAAGTTTGAGAATGGGGCCTTCACGTACTATGGAGTGTCGGCCCTAACTGTGCCATC 2960
Query 663 CTCGGTTCACCAGTCCCCGGTGTCCTCGCTCCAGCCCATCCGCCATGACCTGCAGCCCGACCCAGGTGACGGCA 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 CTCGGTTCACCAGTCCCCGGTGTCCTCGCTCCAGCCCATCCGCCATGACCTGCAGCCCGACCCAGGTGACGGCA 3034
Query 737 CGCATTCATCTGCGTATTGTCCCGACTACACCGTGAGGGCGCTCTCTGATCTGCAGCTCATCAAGGTTACGCGA 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035 CGCATTCATCTGCGTATTGTCCCGACTACACCGTGAGGGCGCTCTCTGATCTGCAGCTCATCAAGGTTACGCGA 3108
Query 811 CTGCAGTACCTCAATGCACTCCTGGCTACCCGAGCCCAGAACCTGCCACAGTCCCCTGAGAACACCGACCTGCA 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 CTGCAGTACCTCAATGCACTCCTGGCTACCCGAGCCCAGAACCTGCCACAGTCCCCTGAGAACACCGACCTGCA 3182
Query 885 GGTTATTCCAGGCAGCCAGACCAGGCTCCTTGGTGAGAAGACCACCACAGCGGC-------------------- 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 GGTTATTCCAGGCAGCCAGACCAGGCTCCTTGGTGAGAAGACCACCACAGCGGCAGCCTTCCCAGTAGACCTTT 3256
Query 939 -------------------------------------------------------------------------- 938
Sbjct 3257 CCCTCTTTGGCACAGTTGGAAACTGCAGTTGATAAATGACTGTGGACTAGTGCGCGTTTTTTGTTTTCAGAGCA 3330
Query 939 ------AGGGTCCAGCCACAGCA--------------------------------------------------- 955
|||||||||||||||||
Sbjct 3331 CACGTAAGGGTCCAGCCACAGCAGGCCCGGCGTCCCGGTGGAAGGCAGCCCTGGGCGGAACCCAGGCGTTTAAC 3404
Query 956 -------------------------------------------------------------------------- 955
Sbjct 3405 GGCTCACTAGGCAGCCCCAGATCTGGGGAACAGATGAGCACGTGGGGAGCTGGAGTGAGCTGAGCAGAAGTTTT 3478
Query 956 -------------------------------------------------------------------------- 955
Sbjct 3479 GTGCCCGCCTGCCCCCATCCCCTCCAGGCCACGTTTTAGATGGCCCTTGTAGTTGCGGGTCCTGGGTGTCCTCA 3552
Query 956 -------------------------------------------------------------------------- 955
Sbjct 3553 GAACTAGACATCAATGCCTGGATCCTTCAGCCGGCCCTGCCCTCCTTTAGGAGACAGGAGTCACCAGGGCACAG 3626
Query 956 ---------------------------------------------------------GGCCCAGCCTTCCCCTT 972
|||||||||||||||||
Sbjct 3627 CCCTCCAGGCCCGCCTCAGGAAGGAATGAAAGGAATGCCATCATCTCTAGTTCCCAGGGCCCAGCCTTCCCCTT 3700
Query 973 CTCCCCCGGGGCAGGGACAGTGCGGCATATTCAGATTCAGACCTCTTTGGGCTGAGCCACCTTGTGAGTGCAGT 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 CTCCCCCGGGGCAGGGACAGTGCGGCATATTCAGATTCAGACCTCTTTGGGCTGAGCCACCTTGTGAGTGCAGT 3774
Query 1047 TACTGCCTTTGTGTGGCCG------------------------------------------------------- 1065
|||||||||||||||||||
Sbjct 3775 TACTGCCTTTGTGTGGCCGTGACCTCTATTTGTTTGCTTTTAATTTGCCAACCTATCGCTGCTGGCAGCACTTT 3848
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 3849 TTGAGCAAGCCGAGAGCACCCATTTTGGCTGGGGGTTCAGATCGATGGCCTTGTCCATGTTGTCCTTTCTGGCT 3922
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 3923 TCCCTGATGGTGTCATGTTTCAGCGCATGCGCCCCAGCCTTTCCCATGTGCCAAACCAGAAGCTCCACTGCCCG 3996
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 3997 TAGGCTGTCCCTGTAGCCCTGCTCCCTCCCTGGAGGCTGCTCTTCTGATTCTGAGAGCTGGCCTAGTGGTGCTG 4070
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4071 AGGGCCCCTTTCTGCTTCTCTGCCCACCTGCTGAGTTGCCACTCGCAGTGTTGTCAGTTCCCGTGTTCTGAGAA 4144
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4145 GAGGTCATGCCTGGGAGGAAGGGATCGTCATGCTGCATCGAATCCTCTCTCCGCCGTGTGGCCCCCAGGAGAGT 4218
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4219 AGCTGCCTGTTGCACCTGCTCCACACCTCCCCACAGCCTCCCTGCAGGTGCTGTGTGGCCGTGATGTGCAGAGA 4292
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4293 GCAGTGAGGGAGGGTTCATGAACCAGGTGGATCCTCTTTAAAAAAAAAAAAGTTTTTGTTATATCTCTAGAACA 4366
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4367 TTTCAAGTCTTTTCCTTTTTTTCTGTTCCTAGCTATGGGGTTTTAGAGAAGTGGGAACAGGAAGGCATTTGTCT 4440
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4441 TTTTCTTCTAGTTTACTACATTTTCCTTCCGTAGTTCTTCAGCTGTGTGGAAACGGGCATCACAAGGACATAGG 4514
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4515 ATCATAGATTGGGTAGGGAGGGAGGAGGATTTCTGGAACTTTTCTCAAAGGAATTTGGACCCTTATAAATGGGA 4588
Query 1066 -------------------------------------------------------------------------- 1065
Sbjct 4589 CTGAAGGTCAAAACAACAGTGATATCCTTGCTTAGAAATTGTCCTCAAGGAATAAACTCTGAGAGCAAGCCCGG 4662
Query 1066 ------------------------------------ 1065
Sbjct 4663 GTTGGAAACAGATGCTTTAAAATCCTCTCTCCAGAA 4698
