Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_15997
Subject:
XM_017007235.2
Aligned Length:
3030
Identities:
388
Gaps:
2634

Alignment

Query    1  ------------------------------------ATGGATACTGAACCAAACCCGGGAACATCTTCTGTGTC  38
                                                ||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCGGAAGCGGAATTTAAGGACCATAGTACAGCTATGGATACTGAACCAAACCCGGGAACATCTTCTGTGTC  74

Query   39  AACAACAACCAGCAGTACCACCACCACCACCATCACCACTTCCTCCTCTCGAATGCAGCAGCCACAGATCTCTG  112
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  AACAACAACCAGCAGTACCACCACCACCACCATCACCACTTCCTCCTCTCGAATGCAGCAGCCACAGATCTCTG  148

Query  113  TCTACAGTGGTTCAGACCGACATGCTGTACAGGCATTGCATCGGCCCCCCAGCTCAGCTGCTCAGTACCTTCAG  186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TCTACAGTGGTTCAGACCGACATGCTGTACAGGCATTGCATCGGCCCCCCAGCTCAGCTGCTCAGTACCTTCAG  222

Query  187  CAAATGTATGCAGCCCAACAACAGCACTTGATGCTGCATACTGCAGCTCTTCAGCAGCAGCATTTAAGCAGCTC  260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CAAATGTATGCAGCCCAACAACAGCACTTGATGCTGCATACTGCAGCTCTTCAGCAGCAGCATTTAAGCAGCTC  296

Query  261  CCAGCTTCAGAGCCTTGCTGCTGTTCAGGCAAGTTTGTCCAGTGGAAGACCATCTACATCTCCCACAGGAAGTG  334
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CCAGCTTCAGAGCCTTGCTGCTGTTCAGGCAAGTTTGTCCAGTGGAAGACCATCTACATCTCCCACAGGAAGTG  370

Query  335  TCACACAGCAGTCAAGTATGTCCCAAACGTCTGT-AAGTTC---------CCTAAATTTTTTTTTCCTG--GAT  396
            ||||||||||||||||||||||||||||||||.| ||..||         ||||.|         ||||  .|.
Sbjct  371  TCACACAGCAGTCAAGTATGTCCCAAACGTCTATCAACCTCTCCACTTCTCCTACA---------CCTGCACAG  435

Query  397  TTAAAA----TTT-------------------------------------------------------------  405
            ||||.|    .||                                                             
Sbjct  436  TTAATAAGCCGTTCCCAGGCTTCCAGTTCTACCAGCGGCAGTATTACCCAACAGACTATGTTACTAGGGAGTAC  509

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  510  TTCCCCTACCCTAACGGCAAGCCAAGCTCAAATGTATCTCCGAGCTCAAATGCTGATTTTCACACCCGCTACCA  583

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  584  CTGTGGCTGCTGTACAGTCTGACATTCCTGTTGTCTCGTCGTCATCGTCATCTTCCTGTCAGTCTGCAGCTACT  657

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  658  CAGGTTCAGAATTTAACATTACGCAGCCAGAAGTTGGGTGTATTATCTAGCTCACAGAATGGTCCACCAAAAAG  731

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  732  CACTAGTCAAACTCAGTCATTGACAATTTGTCATAACAAAACAACAGTGACCAGTTCTAAAATCAGCCAACGAG  805

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  806  ATCCTTCTCCAGAAAGTAATAAGAAAGGAGAGAGCCCAAGCCTGGAATCACGAAGCACAGCTGTCACCCGGACA  879

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  880  TCAAGTATTCACCAGTTAATAGCACCAGCTTCATATTCTCCAATTCAGCCTCATTCTCTAATAAAACATCAGCA  953

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  954  GATTCCTCTTCATTCACCACCTTCCAAAGTTTCCCATCATCAGCTGATATTACAACAGCAGCAACAGCAAATTC  1027

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1028  AGCCAATCACACTTCAGAATTCAACTCAAGACCCACCCCCATCCCAGCACTGTATACCACTCCAGAACCATGGC  1101

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1102  CTTCCTCCAGCTCCCAGTAATGCCCAGTCACAGCATTGTTCACCGATTCAGAGTCATCCCTCTCCTTTAACAGT  1175

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1176  GTCTCCTAATCAGTCACAGTCAGCACAGCAGTCTGTAGTGGTGTCTCCTCCACCACCTCATTCACCAAGTCAGT  1249

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1250  CTCCTACTATAATTATTCATCCACAAGCACTTATTCAGCCACACCCTCTTGTGTCATCAGCTCTCCAGCCAGGG  1323

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1324  CCAAATTTGCAGCAGTCCACTGCTAATCAGGTGCAAGCTACAGCACAGTTGAATCTTCCATCCCATCTTCCACT  1397

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1398  TCCAGCTTCCCCTGTTGTACACATTGGCCCAGTTCAGCAGTCTGCCTTGGTATCCCCAGGCCAGCAGATTGTCT  1471

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1472  CTCCATCACACCAGCAATATTCATCCCTGCAGTCCTCTCCAATCCCAATTGCAAGTCCTCCACAGATGTCGACA  1545

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1546  TCTCCTCCAGCTCAGATTCCACCACTGCCCTTGCAGTCTATGCAGTCTTTACAAGTGCAGCCTGAAATTCTGTC  1619

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1620  CCAGGGCCAGGTTTTGGTGCAGAATGCTTTGGTGTCAGAAGAGGAACTTCCAGCTGCAGAAGCTTTGGTCCAGT  1693

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1694  TGCCATTTCAGACTCTTCCTCCTCCACAGACTGTTGCGGTAAACCTACAAGTGCAACCACCAGCACCTGTTGAT  1767

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1768  CCACCAGTGGGAATGCATTTGAACCAGTGTCATCTGCACAAAGTTTTTTCTCTTAAGGTTTATCAGGTAGAAGA  1841

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1842  TGTGTGTGAAGAAGAAATGCCAGAAGAGTCAGATGAATGTGTCCGGATGGATAGAACCCCACCACCACCCACTT  1915

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1916  TGTCTCCAGCAGCTATAACAGTGGGGAGAGGAGAAGATTTGACTTCTGAACATCCTTTGTTAGAGCAAGTGGAA  1989

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1990  TTACCTGCTGTGGCATCAGTCAGTGCTTCAGTAATTAAATCTCCATCAGATCCCTCACATGTTTCTGTTCCACC  2063

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2064  ACCTCCATTGTTACTTCCAGCTGCCACCACAAGGAGTAACAGTACATCTATGCACAGTAGCATTCCCAGTATAG  2137

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2138  AGAACAAACCTCCACAGGCTATTGTTAAACCACAGATCCTAACCCATGTTATTGAAGGCTTTGTGATTCAGGAG  2211

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2212  GGATTGGAGCCATTTCCTGTGAGTCGTTCCTCTTTGCTAATAGAACAGCCTGTGAAAAAACGGCCTCTTTTGGA  2285

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2286  TAATCAGGTGATAAATTCAGTGTGTGTTCAGCCAGAGCTACAGAATAATACAAAACATGCGGATAATTCATCTG  2359

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2360  ACACAGAGATGGAAGACATGATTGCTGAAGAGACATTAGAAGAAATGGACAGTGAGTTGCTCAAGTGTGAATTC  2433

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2434  TGTGGGAAAATGGGATATGCTAATGAATTTTTGCGGTCAAAACGATTCTGCACTATGTCATGTGCCAAAAGGTA  2507

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2508  CAATGTTAGCTGTTCTAAAAAATTTGCACTTAGTCGTTGGAATCGTAAGCCTGATAATCAAAGTCTTGGGCATC  2581

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2582  GTGGCCGTCGTCCAAGTGGCCCTGATGGGGCAGCGAGAGAACATATCCTTAGGCAGCTTCCAATTACTTATCCA  2655

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2656  TCTGCAGAAGAAGACTTGGCTTCTCATGAAGATTCTGTGCCATCTGCTATGACAACTCGTCTGCGCAGGCAGAG  2729

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2730  CGAGCGGGAAAGAGAACGTGAGCTTCGGGATGTGAGAATTCGGAAAATGCCTGAGAACAGTGACTTGCTACCAG  2803

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2804  TTGCACAAACAGAGCCATCTATATGGACAGTTGATGATGTCTGGGCCTTCATCCATTCTTTGCCTGGCTGCCAG  2877

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2878  GATATCGCAGATGAATTCAGAGCACAGGAGATTGATGGACAGGCCCTTCTCTTGCTGAAAGAAGACCATCTCAT  2951

Query  406  ----------------------------------------------------------------------  405
                                                                                  
Sbjct 2952  GAGTGCAATGAATATCAAGCTAGGCCCAGCCCTGAAGATCTGTGCACGCATCAACTCTCTGAAGGAATCT  3021

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.