Construct: ORF ccsbBroadEn_15997
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015951.1_s300c1, BRDN0000390853
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PHC3 (80012)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XM_006713757.4 | 21.5% | 20.3% | (many diffs) |
| 2 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XM_005247793.3 | 20.9% | 19.7% | (many diffs) |
| 3 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XM_011513189.3 | 15.8% | 14.7% | (many diffs) |
| 4 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XM_017007238.2 | 14.4% | 13.7% | (many diffs) |
| 5 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XM_005247791.4 | 14.3% | 13.5% | (many diffs) |
| 6 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XM_006713756.3 | 14.1% | 13.5% | (many diffs) |
| 7 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XM_017007237.2 | 13.9% | 13% | (many diffs) |
| 8 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XM_011513188.3 | 13.7% | 12.8% | (many diffs) |
| 9 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XM_011513187.3 | 13.4% | 12.6% | (many diffs) |
| 10 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XM_011513186.3 | 13.1% | 12.4% | (many diffs) |
| 11 | human | 80012 | PHC3 | polyhomeotic homolog 3 | NM_001308116.2 | 13.1% | 12.4% | (many diffs) |
| 12 | human | 80012 | PHC3 | polyhomeotic homolog 3 | NM_024947.4 | 12.9% | 12.2% | (many diffs) |
| 13 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XM_017007236.2 | 12.9% | 12.2% | (many diffs) |
| 14 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XM_006713753.2 | 12.9% | 12.2% | (many diffs) |
| 15 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XM_006713754.4 | 12.9% | 12.2% | (many diffs) |
| 16 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XM_017007235.2 | 12.8% | 12.1% | (many diffs) |
| 17 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XM_005247789.3 | 12.7% | 12% | (many diffs) |
| 18 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XR_241509.4 | 11.8% | (many diffs) | |
| 19 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XR_924181.3 | 11.8% | (many diffs) | |
| 20 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XR_001740274.2 | 3% | (many diffs) | |
| 21 | human | 80012 | PHC3 | polyhomeotic homolog 3 | XR_001740275.2 | 2.9% | (many diffs) | |
| 22 | mouse | 241915 | Phc3 | polyhomeotic-like 3 (Drosop... | XM_011249677.1 | 18.5% | 19.4% | (many diffs) |
| 23 | mouse | 241915 | Phc3 | polyhomeotic-like 3 (Drosop... | XM_006535471.3 | 12.7% | 13.2% | (many diffs) |
| 24 | mouse | 241915 | Phc3 | polyhomeotic-like 3 (Drosop... | NM_001165955.1 | 12% | 12.5% | (many diffs) |
| 25 | mouse | 241915 | Phc3 | polyhomeotic-like 3 (Drosop... | NM_001165956.1 | 11.9% | 12.5% | (many diffs) |
| 26 | mouse | 241915 | Phc3 | polyhomeotic-like 3 (Drosop... | XM_006535470.1 | 11.8% | 12.3% | (many diffs) |
| 27 | mouse | 241915 | Phc3 | polyhomeotic-like 3 (Drosop... | XM_006535469.2 | 11.6% | 12.1% | (many diffs) |
| 28 | mouse | 241915 | Phc3 | polyhomeotic-like 3 (Drosop... | NM_153421.2 | 11.5% | 12.1% | (many diffs) |
| 29 | mouse | 241915 | Phc3 | polyhomeotic-like 3 (Drosop... | NM_001165954.1 | 11.4% | 11.9% | (many diffs) |
| 30 | mouse | 241915 | Phc3 | polyhomeotic-like 3 (Drosop... | XM_006535467.2 | 11.2% | 11.7% | (many diffs) |
| 31 | mouse | 241915 | Phc3 | polyhomeotic-like 3 (Drosop... | XR_389590.1 | 3% | (many diffs) | |
| 32 | mouse | 241915 | Phc3 | polyhomeotic-like 3 (Drosop... | XR_001783690.1 | 3% | (many diffs) | |
| 33 | mouse | 241915 | Phc3 | polyhomeotic-like 3 (Drosop... | XR_389591.2 | 3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 471
- ORF length:
- 405
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgga tactgaacca aacccgggaa catcttctgt gtcaacaaca accagcagta 121 ccaccaccac caccatcacc acttcctcct ctcgaatgca gcagccacag atctctgtct 181 acagtggttc agaccgacat gctgtacagg cattgcatcg gccccccagc tcagctgctc 241 agtaccttca gcaaatgtat gcagcccaac aacagcactt gatgctgcat actgcagctc 301 ttcagcagca gcatttaagc agctcccagc ttcagagcct tgctgctgtt caggcaagtt 361 tgtccagtgg aagaccatct acatctccca caggaagtgt cacacagcag tcaagtatgt 421 cccaaacgtc tgtaagttcc ctaaattttt ttttcctgga tttaaaattt tnnccaactt 481 tcttgtacaa agttggcatt ataagaaagc attgcttatc aatttgttgc aacgaac