Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_16147
- Subject:
- NM_001083961.2
- Aligned Length:
- 4569
- Identities:
- 1886
- Gaps:
- 2679
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCGGCCGTAGGGTCCGGAGGCTATGCGCGGAACGATGCAGGGGAGAAGCTGCCCTCTGTCATGGCGGGAGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCGGCGCGGAGGGGCCAGTCCTCCCCGCCCCCCGCCCCACCAATCTGCCTACGGCGGCGGACGCGACTCTCGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGCCTCCGAGGAGACGGTGCAGAACCGGGTGTCACTCGAGAAGGTGCTTGGCATCACAGCCCAGAACAGCAGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGCCTAACCTGTGACCCCGGCACAGGCCATGTGGCCTACCTGGCAGGCTGTGTGGTGGTGATTTTGGACCCCAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGAGAACAAGCAGCAGCACATCTTTAACACCGCCAGGAAGTCTCTCAGTGCTCTGGCCTTCTCCCCTGATGGGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGTACATAGTGACAGGGGAGAATGGGCATAGGCCTGCTGTGCGCATCTGGGATGTGGAGGAGAAGAATCAGGTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCGGAGATGCTAGGCCACAAGTATGGTGTGGCGTGTGTGGCCTTCTCACCCAATATGAAGCACATCGTGTCCAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGGCTACCAACATGACATGGTGCTCAACGTCTGGGACTGGAAGAAAGACATCGTAGTGGCCTCCAACAAGGTAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTTGTAGAGTCATTGCCCTCTCCTTCTCAGAGGACAGCAGCTATTTTGTCACTGTTGGGAACCGCCATGTGAGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTCTGGTTCTTGGAAGTCTCCACTGAGACAAAGGTGACGAGCACAGTGCCCCTTGTAGGGCGCTCGGGCATCCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGGCGAGCTGCACAACAACATCTTCTGTGGTGTGGCCTGCGGTCGGGGCCGGATGGCGGGCAGTACCTTCTGTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGTCCTACTCGGGCCTCCTCTGCCAGTTCAATGAGAAGAGGGTGCTGGAGAAGTGGATCAACCTGAAGGTCTCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTGTCTTCCTGCCTCTGTGTCAGCCAGGAGCTCATCTTCTGTGGCTGCACAGATGGGATAGTCCGCATCTTCCA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGCCCATAGCCTGCACTACCTCGCCAACCTGCCCAAGCCACACTACCTTGGGGTAGACGTGGCACAGGGCCTGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGCCCAGCTTCCTCTTCCACAGGAAGGCGGAAGCAGTCTACCCAGATACAGTGGCACTGACCTTCGACCCCATC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CACCAGTGGCTGTCCTGCGTGTATAAGGACCACAGCATCTACATCTGGGATGTCAAGGACATCAACAGAGTGGG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CAAGGTGTGGTCAGAGCTCTTCCACAGCTCCTACGTTTGGAACGTGGAGGTGTATCCTGAGTTTGAAGACCAGA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GAGCTTGTTTGCCATCAGGATCCTTTCTGACTTGTTCTTCAGACAACACCATTCGCTTCTGGAACTTGGACAGC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AGCCCTGATTCTCACTGGCAGAAAAACATCTTCAGCAATACCCTGCTGAAGGTCGTGTACGTGGAGAATGACAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CCAGCACCTGCAGGACATGTCACACTTCCCAGACCGGGGGAGCGAGAATGGGACACCCATGGACGTGAAAGCCG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGGTGCGGGTCATGCAGGTCAGTCCTGACGGCCAGCATTTGGCTTCAGGCGACCGAAGTGGAAATCTGAGGATC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CACGAGCTGCACTTCATGGACGAGCTGGTCAAGGTGGAGGCCCATGATGCTGAGGTGCTGTGCCTGGAGTACTC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAAGCCAGAGACGGGGCTGACCTTGCTGGCCTCAGCCAGTCGGGACCGGCTGATCCATGTGCTGAACGTGGAGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGAACTACAACCTGGAGCAGACGCTGGATGACCACTCCTCCTCCATCACCGCCATCAAGTTCGCTGGCAACAGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GACATCCAGATGATCAGCTGTGGGGCTGACAAGAGCATCTACTTTCGCAGTGCCCAGCAGGGTTCGGATGGACT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ACACTTTGTCCGTACCCACCACGTAGCAGAGAAAACCACCTTGTATGACATGGACATTGACATCACCCAGAAGT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ACGTGGCCGTGGCCTGCCAGGACCGCAATGTGAGAGTCTACAACACTGTGAACGGGAAGCAGAAGAAGTGCTAC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AAGGGCTCCCAGGGTGACGAAGGGTCCTTGCTGAAGGTCCATGTGGACCCCTCAGGCACCTTCCTGGCCACCAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CTGCTCTGACAAAAGCATCTCAGTGATTGACTTTTACTCGGGCGAGTGCATTGCCAAGATGTTTGGCCATTCAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AAATTATTACCAGCATGAAGTTCACCTATGACTGTCATCACTTGATCACAGTATCTGGAGACAGCTGCGTGTTC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ATCTGGCACCTGGGCCCGGAGATCACCAACTGCATGAAGCAGCACTTGCTGGAGATTGACCACCGGCAGCAGCA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GCAGCACACAAATGACAAGAAGCGGAGTGGCCACCCCAGGCAGGATACGTATGTGTCCACACCTAGTGAGATTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACTCCCTGAGCCCTGGAGAGCAAACAGAGGATGATCTGGAGGAAGAGTGTGAGCCAGAAGAGATGCTGAAGACA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CCATCCAAAGATAGCTTGGATCCAGATCCTCGTTGCCTGCTAACCAACGGCAAGCTGCCACTGTGGGCAAAGCG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GCTGCTAGGGGACGATGATGTGGCAGATGGCTTGGCCTTCCACGCCAAGCGCAGCTACCAGCCCCACGGCCGCT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GGGCAGAGCGGGCCGGCCAAGAGCCCCTCAAGACCATCCTGGATGCCCAGGACCTGGATTGCTACTTTACCCCC 2664
Query 1 ATGAAGCCCGAGAGTCTGGAGAACTCCATTCTGGATTCACTGGAGCCACAGAGCCTGGCCAGCCTGCTGAGTGA 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 ATGAAGCCCGAGAGTCTGGAGAACTCCATTCTGGATTCACTGGAGCCACAGAGCCTGGCCAGCCTGCTGAGTGA 2738
Query 75 GTCAGAGAGTCCCCAGGAAGCTGGCCGCGGGCACCCCTCCTTCCTGCCCCAGCAGAAGGAATCATCTGAGGCCA 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 GTCAGAGAGTCCCCAGGAAGCTGGCCGCGGGCACCCCTCCTTCCTGCCCCAGCAGAAGGAATCATCTGAGGCCA 2812
Query 149 GTGAGCTCATCCTCTACTCTCTGGAGGCAGAAGTGACAGTCACAGGGACAGACAGCCAGTATTGCAGGAAGGAG 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 GTGAGCTCATCCTCTACTCTCTGGAGGCAGAAGTGACAGTCACAGGGACAGACAGCCAGTATTGCAGGAAGGAG 2886
Query 223 GTGGAGGCCGGGCCTGGAGACCAGCAGGGCGACTCCTACCTCAGGGTGTCCTCCGACAGCCCAAAGGACCAGAG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 GTGGAGGCCGGGCCTGGAGACCAGCAGGGCGACTCCTACCTCAGGGTGTCCTCCGACAGCCCAAAGGACCAGAG 2960
Query 297 CCCGCCTGAGGACTCGGGGGAGTCAGAGGCCGACCTGGAGTGCAGCTTCGCAGCCATCCACTCCCCAGCTCCGC 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 CCCGCCTGAGGACTCGGGGGAGTCAGAGGCCGACCTGGAGTGCAGCTTCGCAGCCATCCACTCCCCAGCTCCGC 3034
Query 371 CTCCTGACCCTGCCCCTCGGTTTGCCACGTCGCTGCCCCATTTCCCAGGATGCGCAGGTCCCACAGAAGATGAG 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035 CTCCTGACCCTGCCCCTCGGTTTGCCACGTCGCTGCCCCATTTCCCAGGATGCGCAGGTCCCACAGAAGATGAG 3108
Query 445 CTGTCCCTGCCCGAGGGACCCAGCGTCCCCAGCAGCTCCCTACCCCAGACTCCGGAGCAGGAGAAGTTCCTCCG 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 CTGTCCCTGCCCGAGGGACCCAGCGTCCCCAGCAGCTCCCTACCCCAGACTCCGGAGCAGGAGAAGTTCCTCCG 3182
Query 519 CCACCACTTTGAGACACTGACTGAGTCCCCCTGCAG---------------AGCTCTGGGAGACGTGGAGGCCT 577
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3183 CCACCACTTTGAGACACTGACTGAGTCCCCCTGCAGAGAGCTCTTCCCCGCAGCTCTGGGAGACGTGGAGGCCT 3256
Query 578 CTGAAGCTGAAGACCACTTCTTCAACCCACGCCTGAGTATCTCCACGCAGTTCCTCTCAAGCCTCCAGAAGGCA 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 CTGAAGCTGAAGACCACTTCTTCAACCCACGCCTGAGTATCTCCACGCAGTTCCTCTCAAGCCTCCAGAAGGCA 3330
Query 652 TCCAGGTTCACCCATACCTTCCCTCCCCGGGCAACCCAGTGCCTTGTGAAGTCTCCAGAGGTCAAGCTCATGGA 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 TCCAGGTTCACCCATACCTTCCCTCCCCGGGCAACCCAGTGCCTTGTGAAGTCTCCAGAGGTCAAGCTCATGGA 3404
Query 726 CCGAGGCGGAAGCCAGCCCAGAGCAGGTACTGGCTACGCCTCCCCAGACAGGACCCACGTCCTTGCTGCAGGGA 799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct 3405 CCGAGGCGGAAGCCAGCCCAGAGCAGGTACTGGCTACGCCTCCCCAGACAGGACCCACGTCCTCGCTGCAGGGA 3478
Query 800 AGGCTGAAGAGACCCTGGAGGCCTGGCGCCCACCACCTCCCTGCCTTACGAGCCTGGCGTCCTGTGTCCCTGCT 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 AGGCTGAAGAGACCCTGGAGGCCTGGCGCCCACCACCTCCCTGCCTTACGAGCCTGGCGTCCTGTGTCCCTGCT 3552
Query 874 TCCTCCGTGCTGCCCACAGACAGGAATCTCCCAACGCCCACATCTGCACCCACCCCAGGCCTGGCTCAGGGTGT 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553 TCCTCCGTGCTGCCCACAGACAGGAATCTCCCAACGCCCACATCTGCACCCACCCCAGGCCTGGCTCAGGGTGT 3626
Query 948 CCATGCCCCCTCCACCTGTTCCTACATGGAGGCCACTGCCAGCTCCCGTGCCAGGATATCACGCAGCATCTCCC 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627 CCATGCCCCCTCCACCTGTTCCTACATGGAGGCCACTGCCAGCTCCCGTGCCAGGATATCACGCAGCATCTCCC 3700
Query 1022 TCGGTGACAGTGAGGGCCCTATCGTGGCCACACTGGCCCAGCCCCTCCGTAGGCCATCGTCCGTTGGGGAGCTG 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 TCGGTGACAGTGAGGGCCCTATCGTGGCCACACTGGCCCAGCCCCTCCGTAGGCCATCGTCCGTTGGGGAGCTG 3774
Query 1096 GCCTCCTTGGGCCAGGAGCTTCAGGCCATCACCACCGCGACAACACCCAGTTTGGACAGTGAGGGCCAAGAGCC 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 GCCTCCTTGGGCCAGGAGCTTCAGGCCATCACCACCGCGACAACACCCAGTTTGGACAGTGAGGGCCAAGAGCC 3848
Query 1170 TGCCCTGCGTTCCTGGGGCAACCACGAGGCCCGGGCCAACCTGAGACTGACCCTGTCAAGTGCCTGTGATGGGC 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 TGCCCTGCGTTCCTGGGGCAACCACGAGGCCCGGGCCAACCTGAGACTGACCCTGTCAAGTGCCTGTGATGGGC 3922
Query 1244 TCCTGCTGCCCCCCGTGGATACCCAGCCTGGCGTCACCGTCCCTGCAGTGAGCTTCCCAGCCCCTAGCCCTGTG 1317
||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923 TCCTGCAGCCCCCCGTGGATACCCAGCCTGGCGTCACCGTCCCTGCAGTGAGCTTCCCAGCCCCTAGCCCTGTG 3996
Query 1318 GAAGAGAGCGCCCTGAGGCTCCACGGCTCTGCCTTTCGCCCAAGTCTCCCAGCTCCTGAGTCCCCTGGCCTTCC 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3997 GAAGAGAGCGCCCTGAGGCTCCACGGCTCTGCCTTTCGCCCAAGTCTCCCAGCTCCTGAGTCCCCTGGCCTTCC 4070
Query 1392 TGCCCACCCCAGTAACCCCCAGCTTCCAGAGGCCCGGCCTGGCATCCCTGGCAGCACTGCCTCCCTCCTGGAGC 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 4071 TGCCCACCCCAGTAACCCCCAGCTTCCAGAGGCCCGGCCTGGCATCCCTGGCGGCACTGCCTCCCTCCTGGAGC 4144
Query 1466 CCACCTCCGGTGCACTTGGTCTGTTCCAGGGCAGCCCTGCCCGCTGGAGTGAGCCCTGGGTGCCGGTTGAAGCC 1539
|||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4145 CCACCTCCGGTGCACTTGGTCTGTTACAGGGCAGCCCTGCCCGCTGGAGTGAGCCCTGGGTGCCGGTTGAAGCC 4218
Query 1540 CTGCCCCCATCTCCCCTTGAGCTGAGCAGGGTGGGGAACATCTTGCACAGGCTGCAGACCACCTTCCAAGAAGC 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4219 CTGCCCCCATCTCCCCTTGAGCTGAGCAGGGTGGGGAACATCTTGCACAGGCTGCAGACCACCTTCCAAGAAGC 4292
Query 1614 CCTCGACCTTTACCGTGTGTTGGTCTCCAGTGGCCAGGTGGACACCGGGCAGCAGCAGGCACGGACTGAGCTGG 1687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4293 CCTCGACCTTTACCGTGTGTTGGTCTCCAGTGGCCAGGTGGACACCGGGCAGCAGCAGGCACGGACTGAGCTGG 4366
Query 1688 TCTCCACCTTCCTGTGGATCCACAGCCAGCTGGAGGCTGAATGCCTGGTGGGGACTAGTGTGGCCCCAGCCCAG 1761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4367 TCTCCACCTTCCTGTGGATCCACAGCCAGCTGGAGGCTGAATGCCTGGTGGGGACTAGTGTGGCCCCAGCCCAG 4440
Query 1762 GCTCTGCCCAGCCCAGGACCCCCGTCCCCACCGACGCTGTACCCCCTGGCCAGCCCAGACCTGCAGGCCCTGCT 1835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4441 GCTCTGCCCAGCCCAGGACCCCCGTCCCCACCGACGCTGTACCCCCTGGCCAGCCCAGACCTGCAGGCCCTGCT 4514
Query 1836 GGAACACTACTCGGAGCTGCTGGTGCAGGCCGTGCGGAGGAAGGCACGGGGGCAC 1890
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4515 GGAACACTACTCGGAGCTGCTGGTGCAGGCCGTGCGGAGGAAGGCACGGGGGCAC 4569
