Construct: ORF ccsbBroadEn_16147
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013328.1_s300c1, BRDN0000396705
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- WDR62 (284403)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 284403 | WDR62 | WD repeat domain 62 | XM_011526843.1 | 81.4% | 81.2% | (many diffs) |
| 2 | human | 284403 | WDR62 | WD repeat domain 62 | XM_011526844.2 | 81.4% | 81.2% | (many diffs) |
| 3 | human | 284403 | WDR62 | WD repeat domain 62 | XM_011526842.1 | 62.8% | 62.7% | (many diffs) |
| 4 | human | 284403 | WDR62 | WD repeat domain 62 | XM_011526841.2 | 59.9% | 59.7% | (many diffs) |
| 5 | human | 284403 | WDR62 | WD repeat domain 62 | XM_011526840.2 | 52.9% | 52.8% | (many diffs) |
| 6 | human | 284403 | WDR62 | WD repeat domain 62 | XM_011526839.1 | 44.7% | 44.5% | (many diffs) |
| 7 | human | 284403 | WDR62 | WD repeat domain 62 | NM_173636.5 | 41.4% | 41.3% | (many diffs) |
| 8 | human | 284403 | WDR62 | WD repeat domain 62 | XM_011526837.1 | 41.4% | 41.3% | (many diffs) |
| 9 | human | 284403 | WDR62 | WD repeat domain 62 | NM_001083961.2 | 41.2% | 41.1% | (many diffs) |
| 10 | human | 284403 | WDR62 | WD repeat domain 62 | XM_017026665.1 | 41.2% | 41.1% | (many diffs) |
| 11 | human | 284403 | WDR62 | WD repeat domain 62 | XM_005258809.2 | 38.8% | 38.7% | (many diffs) |
| 12 | human | 284403 | WDR62 | WD repeat domain 62 | XM_011526838.1 | 36.2% | 35.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1956
- ORF length:
- 1890
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgaa gcccgagagt ctggagaact ccattctgga ttcactggag ccacagagcc 121 tggccagcct gctgagtgag tcagagagtc cccaggaagc tggccgcggg cacccctcct 181 tcctgcccca gcagaaggaa tcatctgagg ccagtgagct catcctctac tctctggagg 241 cagaagtgac agtcacaggg acagacagcc agtattgcag gaaggaggtg gaggccgggc 301 ctggagacca gcagggcgac tcctacctca gggtgtcctc cgacagccca aaggaccaga 361 gcccgcctga ggactcgggg gagtcagagg ccgacctgga gtgcagcttc gcagccatcc 421 actccccagc tccgcctcct gaccctgccc ctcggtttgc cacgtcgctg ccccatttcc 481 caggatgcgc aggtcccaca gaagatgagc tgtccctgcc cgagggaccc agcgtcccca 541 gcagctccct accccagact ccggagcagg agaagttcct ccgccaccac tttgagacac 601 tgactgagtc cccctgcaga gctctgggag acgtggaggc ctctgaagct gaagaccact 661 tcttcaaccc acgcctgagt atctccacgc agttcctctc aagcctccag aaggcatcca 721 ggttcaccca taccttccct ccccgggcaa cccagtgcct tgtgaagtct ccagaggtca 781 agctcatgga ccgaggcgga agccagccca gagcaggtac tggctacgcc tccccagaca 841 ggacccacgt ccttgctgca gggaaggctg aagagaccct ggaggcctgg cgcccaccac 901 ctccctgcct tacgagcctg gcgtcctgtg tccctgcttc ctccgtgctg cccacagaca 961 ggaatctccc aacgcccaca tctgcaccca ccccaggcct ggctcagggt gtccatgccc 1021 cctccacctg ttcctacatg gaggccactg ccagctcccg tgccaggata tcacgcagca 1081 tctccctcgg tgacagtgag ggccctatcg tggccacact ggcccagccc ctccgtaggc 1141 catcgtccgt tggggagctg gcctccttgg gccaggagct tcaggccatc accaccgcga 1201 caacacccag tttggacagt gagggccaag agcctgccct gcgttcctgg ggcaaccacg 1261 aggcccgggc caacctgaga ctgaccctgt caagtgcctg tgatgggctc ctgctgcccc 1321 ccgtggatac ccagcctggc gtcaccgtcc ctgcagtgag cttcccagcc cctagccctg 1381 tggaagagag cgccctgagg ctccacggct ctgcctttcg cccaagtctc ccagctcctg 1441 agtcccctgg ccttcctgcc caccccagta acccccagct tccagaggcc cggcctggca 1501 tccctggcag cactgcctcc ctcctggagc ccacctccgg tgcacttggt ctgttccagg 1561 gcagccctgc ccgctggagt gagccctggg tgccggttga agccctgccc ccatctcccc 1621 ttgagctgag cagggtgggg aacatcttgc acaggctgca gaccaccttc caagaagccc 1681 tcgaccttta ccgtgtgttg gtctccagtg gccaggtgga caccgggcag cagcaggcac 1741 ggactgagct ggtctccacc ttcctgtgga tccacagcca gctggaggct gaatgcctgg 1801 tggggactag tgtggcccca gcccaggctc tgcccagccc aggacccccg tccccaccga 1861 cgctgtaccc cctggccagc ccagacctgc aggccctgct ggaacactac tcggagctgc 1921 tggtgcaggc cgtgcggagg aaggcacggg ggcactnncc aactttcttg tacaaagttg 1981 gcattataag aaagcattgc ttatcaattt gttgcaacga ac