Construct: sgRNA BRDN0001145021

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
GGGGAGCAGAGATACCCCTG

Original Target:

Taxon:
Homo sapiens (human)
Gene:
MINK1 (50488)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
76261

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000017.11 17 4893588 + MINK1 NNNGAGCAGAGATACCCCTG NGG 0 1.0 Tier I
2 NC_000023.11 X 86309458 - DACH2 NNNGAGTAGAGATACCCCTG NGG 1 0.8125 Tier II
3 NC_000011.10 11 44923841 - TSPAN18 NNNGAACAGAGACACCCCTG NGG 2 0.7895 Tier II
4 NC_000006.12 6 144063713 - PLAGL1 NNNGGACAGAGATACCCCTG NGG 2 0.72 Tier II
5 NC_000014.9 14 59561982 + CCDC175 NNNGATCAGAGATACACCTG NGG 2 0.6667 Tier II
6 NC_000012.12 12 70311463 - CNOT2 NNNGAGGAGAGATACACCTG NGG 2 0.4706 Tier II
7 NC_000023.11 X 152117443 + LOC100533997 NNNGAGCAGAGACTCCCCTG NGG 2 0.4211 Tier II
8 NC_000007.14 7 151850961 - PRKAG2 NNNGAGCAGGGGTACCCCTG NGG 2 0.4012 Tier II
9 NC_000023.11 X 72006064 - NHSL2 NNNGAGAAGAGATACCACTG NGG 2 0.35 Tier II
10 NC_000018.10 18 36453573 + FHOD3 NNNGAGCAGTTATACCCCTG NGG 2 0.3394 Tier II
11 NC_000010.11 10 71999805 + CHST3 NNNGAGCAGAAAGACCCCTG NGG 2 0.2609 Tier II
12 NC_000001.11 1 37756434 - EPHA10 NNNCAGCAGAGATACCACTG NGG 2 0.2471 Tier II
13 NC_000022.11 22 29721345 + CABP7 NNNGAGCAGTGAGACCCCTG NGG 2 0.2302 Tier II
14 NC_000016.10 16 79196462 - WWOX NNNGAGCAGAGATAACCCTG NGG 1 0.2222 Tier II
15 NC_000011.10 11 11484648 - GALNT18 NNNCAGCAGAGAGACCCCTG NGG 2 0.1381 Tier II
16 NC_000009.12 9 135789715 + KCNT1 NNNGAGCAGAGCTACCACTG NGG 2 0.1228 Tier II
17 NC_000012.12 12 5634160 + ANO2 NNNGAGCAGAGCTGCCCCTG NGG 2 0.1228 Tier II
18 NC_000011.10 11 27378398 + LGR4 NNNGAGGAGAGATACCCCTG NAG 2 0.122 Tier II
19 NC_000016.10 16 87702652 - KLHDC4 NNNGAGCAGAGAGGCCCCTG NGG 2 0.1217 Tier II
20 NC_000006.12 6 43010389 + PPP2R5D NNNTAGCAGAGATACCCCTG NGA 2 0.0253 Tier II
21 NC_000002.12 2 77174432 - LRRTM4 NNNGAGCAGAGATACACCTG NGC 2 0.0222 Tier II
22 NC_000019.10 19 40670500 + NUMBL NNNGAGCAGAGATACACCTG NGC 2 0.0222 Tier II
23 NC_000002.12 2 240774310 - KIF1A NNNGAGCAGACATAGCCCTG NGG 2 0.0214 Tier II
24 NC_000013.11 13 56696125 - LOC105370214 NNNGATCAGAGACACCCCTG NGG 2 0.5263 Tier III
25 NC_000023.11 X 152117443 + MAGEA5P NNNGAGCAGAGACTCCCCTG NGG 2 0.4211 Tier III
26 NC_000023.11 X 152117443 + LOC105373369 NNNGAGCAGAGACTCCCCTG NGG 2 0.4211 Tier III
27 NC_000002.12 2 87471535 + CYTOR NNNGAGCAGAGGTGCCCCTG NGG 2 0.337 Tier III
28 NC_000002.12 2 87471535 + NCAL1 NNNGAGCAGAGGTGCCCCTG NGG 2 0.337 Tier III
29 NC_000002.12 2 111478676 - MIR4435-2HG NNNGAGCAGAGGTGCCCCTG NGG 2 0.337 Tier III
30 NC_000005.10 5 62105269 - LOC124900610 NNNGAGCTGATATACCCCTG NGG 2 0.1648 Tier III
31 NC_000015.10 15 79832771 + LOC124903536 NNNGAGCAGAGATACCCTGG NGG 2 0.1607 Tier III
32 NC_000007.14 7 99992779 + LOC100128334 NNNCAGCAGAGATACCCCAG NGG 2 0.1513 Tier III
33 NC_000009.12 9 135789715 + LOC107987140 NNNGAGCAGAGCTACCACTG NGG 2 0.1228 Tier III
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Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000067.6 1 75421961 - Speg NNNCAGCAGAGCTACCCCTG NGG 2 0.1393 Tier I
2 NC_000081.6 15 32459390 - Sema5a NNNGAGAAGAGAAACCCCTG NGG 2 0.5192 Tier II
3 NC_000083.6 17 65728104 - Rab31 NNNGACCAGAGGTACCCCTG NGG 2 0.4924 Tier II
4 NC_000073.6 7 135095717 - Dock1 NNNGAGCTGTGATACCCCTG NGG 2 0.3782 Tier II
5 NC_000070.6 4 123107064 - Bmp8b NNNGATCAGAGATTCCCCTG NGG 2 0.3556 Tier II
6 NC_000068.7 2 153495233 - Nol4l NNNGAGAAGAGATGCCCCTG NGG 2 0.35 Tier II
7 NC_000073.6 7 29941002 + Zfp74 NNNGACCAGAGATACCACTG NGG 2 0.3182 Tier II
8 NC_000068.7 2 31429149 + Hmcn2 NNNGAGCAGAGATGCCTCTG NGG 2 0.2178 Tier II
9 NC_000073.6 7 66815305 + Cers3 NNNGGGCAGAGCTACCCCTG NGG 2 0.1895 Tier II
10 NC_000081.6 15 96404001 - Arid2 NNNGAGCACAGAGACCCCTG NGG 2 0.1405 Tier II
11 NC_000071.6 5 148388259 + Slc7a1 NNNGAGCAGCGAGACCCCTG NGG 2 0.087 Tier II
12 NC_000068.7 2 25336618 - Man1b1 NNNGAGCAGAGACACCCCTG NGA 2 0.0548 Tier II
13 NC_000085.6 19 10930476 + Ptgdr2 NNNGAGCAGAGATGTCCCTG NGG 2 0.0311 Tier II
14 NC_000073.6 7 98071225 + Myo7a NNNGAGCACAGATAGCCCTG NGG 2 0.0269 Tier II
15 NC_000082.6 16 31012656 - Xxylt1 NNNGAGCAGAGATACCCCAG NGA 2 0.0198 Tier II
16 NC_000074.6 8 119762882 + Meak7 NNNGAGCAGAGAGACCCCTG NGA 2 0.0181 Tier II
17 NC_000080.6 14 9869528 + Fhit NNNGAGCAGAGCTACCCCTG NGC 2 0.0058 Tier II
18 NC_000068.7 2 153495233 - 4930404H24Rik NNNGAGAAGAGATGCCCCTG NGG 2 0.35 Tier III
19 NC_000079.6 13 107128596 + Gm31452 NNNGAGCAGAGATTCCCCTG NAG 2 0.1383 Tier III
20 NC_000079.6 13 107128596 + Gm41051 NNNGAGCAGAGATTCCCCTG NAG 2 0.1383 Tier III
21 NC_000085.6 19 21105113 - 4930554I06Rik NNNGAGCAGATTTACCCCTG NGG 2 0.1282 Tier III
22 NC_000079.6 13 71740988 - Gm40999 NNNGAGCTGAGATAACCCTG NGG 2 0.0952 Tier III
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Other clones with same target sequence:

(none)