Construct: sgRNA BRDN0001145246

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
ATTTGTATGGAATACTGTGG

Original Target:

Taxon:
Homo sapiens (human)
Gene:
MAP4K5 (11183)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
75710

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000014.9 14 50485610 - MAP4K5 NNNTGTATGGAATACTGTGG NGG 0 1.0 Tier I
2 NC_000010.11 10 43511377 + ZNF487 NNNTGTGTGGAATACTGTGA NGG 2 0.6618 Tier II
3 NC_000023.11 X 69866887 + EDA NNNTGTGTGGAATACTGTGA NGG 2 0.6618 Tier II
4 NC_000016.10 16 19458541 - TMC5 NNNTGCCTGGAATACTGTGG NGG 2 0.3977 Tier II
5 NC_000001.11 1 201686295 - NAV1 NNNTGGATGGAATACTGAGG NGG 2 0.381 Tier II
6 NC_000009.12 9 92354121 + CENPP NNNTGTATGGCATACTGTGA NGG 2 0.375 Tier II
7 NC_000014.9 14 103630789 + KLC1 NNNTGTATGGAATTCTGTGT NGG 2 0.3733 Tier II
8 NC_000016.10 16 47139164 - NETO2 NNNTGTATTGAATACTGTTG NGG 2 0.3556 Tier II
9 NC_000006.12 6 64418979 + EYS NNNTGTCTGGAGTACTGTGG NGG 2 0.316 Tier II
10 NC_000008.11 8 10117042 + MSRA NNNTGTATGGAATAATGTGA NGG 2 0.2083 Tier II
11 NC_000003.12 3 36868055 + TRANK1 NNNTGAATGGAATCCTGTGG NGG 2 0.1857 Tier II
12 NC_000016.10 16 9894753 + GRIN2A NNNTGTCTGGCATACTGTGG NGG 2 0.175 Tier II
13 NC_000003.12 3 8766946 - OXTR NNNTGTATGGTTTACTGTGG NGG 2 0.1026 Tier II
14 NC_000011.10 11 30488421 - MPPED2 NNNTGTATGGAAGAATGTGG NGG 2 0.058 Tier II
15 NC_000022.11 22 26207224 - SEZ6L NNNTGAATGGAATACTGTGG NGC 2 0.0193 Tier II
16 NC_000006.12 6 136789538 - MAP3K5 NNNTGTATGGAATAGTGGGG NGG 2 0.0167 Tier II
17 NC_000010.11 10 124926014 + ZRANB1 NNNTGTATTGAATACTGTGG NGT 2 0.0086 Tier II
18 NC_000006.12 6 125092549 + RNF217 NNNTGTATGGATTACTGTGG NGT 2 0.0054 Tier II
19 NC_000001.11 1 108240308 - NBPF4 NNNTGTATGGAATACTGTGG NAC 2 0.0 Tier II
20 NC_000001.11 1 108454038 + NBPF6 NNNTGTATGGAATACTGTGG NAC 2 0.0 Tier II
21 NC_000007.14 7 52389591 - LOC124901810 NNNTGTGTGGAATACTGTGA NGG 2 0.6618 Tier III
22 NC_000007.14 7 90109259 + STEAP2-AS1 NNNTGTATGGAATACAGTGG NAG 2 0.2357 Tier III
23 NC_000005.10 5 118215754 + LINC02147 NNNTGTATTGATTACTGTGG NGG 2 0.1778 Tier III
24 NC_000002.12 2 195123232 - LOC105376755 NNNTTTATGGAATAATGTGG NGG 2 0.0667 Tier III
25 NC_000018.10 18 80152138 + PARD6G-AS1 NNNTGTATGGAAAACTGTGG NGA 2 0.0481 Tier III
26 NC_000023.11 X 10886647 + HCCS-DT NNNTGTATGGGATACTGTGG NTG 2 0.0253 Tier III
27 NC_000011.10 11 25543646 + LINC02699 NNNTTTATGGAATACTGTGG NTG 2 0.0117 Tier III
28 NC_000001.11 1 108379577 + NBPF5P NNNTGTATGGAATACTGTGG NAC 2 0.0 Tier III
29 NC_000009.12 9 86681686 + LINC02834 NNNTGTATGGAATACTGTGG NCA 2 0.0 Tier III
Download CSV

Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000083.6 17 80655889 - Map4k3 NNNTGCATGGAATTCTGTGG NGG 2 0.4848 Tier I
2 NC_000085.6 19 6341936 + Map4k2 NNNTGTATGGAGTTCTGTGG NGG 2 0.3852 Tier I
3 NC_000082.6 16 41099358 - Lsamp NNNTGTATGAAATACAGTGG NGG 2 0.8485 Tier II
4 NC_000075.6 9 7359878 - Mmp12 NNNTGTGTGGAATACTATGG NGG 2 0.6588 Tier II
5 NC_000078.6 12 74132462 - Syt16 NNNTGCATGGAATACTGAGG NGG 2 0.6061 Tier II
6 NC_000077.6 11 29768505 - Eml6 NNNAGTATGGAATACTGTGG NGG 1 0.4762 Tier II
7 NC_000080.6 14 123492264 + Nalcn NNNTGGATGGAAAACTGTGG NGG 2 0.3956 Tier II
8 NC_000073.6 7 16865602 + Prkd2 NNNTGTTTGGAATACTGAGG NGG 2 0.2917 Tier II
9 NC_000082.6 16 85456881 + Cyyr1 NNNTGTTTGGAATACTGTTG NGG 2 0.2917 Tier II
10 NC_000076.6 10 62575819 + Kifbp NNNTGTATGCAGTACTGTGG NGG 2 0.2889 Tier II
11 NC_000073.6 7 100742712 + Fam168a NNNTGTTTGGGATACTGTGG NGG 2 0.2844 Tier II
12 NC_000072.6 6 6058792 - Slc25a13 NNNTGTCTTGAATACTGTGG NGG 2 0.2333 Tier II
13 NC_000072.6 6 39974549 + Tmem178b NNNTGTATGGACAACTGTGG NGG 2 0.1822 Tier II
14 NC_000076.6 10 105768895 + Mettl25 NNNTGTATAGAAGACTGTGG NGG 2 0.1677 Tier II
15 NC_000070.6 4 137528337 - Hspg2 NNNTGTATGGAAGCCTGTGG NGG 2 0.0559 Tier II
16 NC_000082.6 16 94889544 + Kcnj6 NNNTGCATGGAATACTGTGG NTG 2 0.0354 Tier II
17 NC_000068.7 2 77663230 - Zfp385b NNNTGTATGGTATATTGTGG NGG 2 0.0205 Tier II
18 NC_000075.6 9 94679508 - Slc9a9 NNNTGTATGGAATACTGTAG NGC 2 0.0159 Tier II
19 NC_000071.6 5 100701969 + Hpse NNNTGTATGCAATACTGTGG NTG 2 0.0156 Tier II
20 NC_000085.6 19 30986161 - Prkg1 NNNTGAATGGAATACTGTGG NGT 2 0.014 Tier II
21 NC_000084.6 18 37896020 - Diaph1 NNNTGTATGGAATAGTGTGG NGA 2 0.0035 Tier II
22 NC_000085.6 19 24791984 - Pgm5 NNNTGTATGGAATACTGTGG NTA 2 0.0 Tier II
23 NC_000068.7 2 110375249 - Gm30319 NNNCATATGGAATACTGTGG NGG 2 0.5608 Tier III
24 NC_000068.7 2 105620949 + Pax6os1 NNNTGTATGGAAAACTGTGG NAG 2 0.1795 Tier III
25 NC_000069.6 3 58096689 + Gm40056 NNNTATATGGAATACTGTGG NGC 2 0.0193 Tier III
Download CSV

Other clones with same target sequence:

(none)

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