Construct: sgRNA BRDN0001145259
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- TTGCTCCCTCGAAAAGAGCG
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- ABL1 (25)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 77734
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000009.12 |
9 |
130884018 |
+ |
ABL1 |
NNNCTCCCTCGAAAAGAGCG |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000015.10 |
15 |
25708033 |
- |
ATP10A |
NNNCTCCCTGGAAAACAGCG |
NGG |
2 |
0.0 |
Tier I |
| 3 |
NC_000007.14 |
7 |
72793895 |
+ |
TYW1B |
NNNCTCCCTCAAAAAGAGAG |
NGG |
2 |
0.4286 |
Tier II |
| 4 |
NC_000003.12 |
3 |
153210354 |
+ |
LOC105374164 |
NNNCTCCCTCGAAATGAGCG |
NGG |
1 |
0.2 |
Tier III |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000068.7 |
2 |
31800255 |
+ |
Abl1 |
NNNCTTCCTCGGAAAGAGCG |
NGG |
2 |
0.6706 |
Tier I |
| 2 |
NC_000075.6 |
9 |
83401602 |
+ |
Lca5 |
NNNCGCCGTCGAAAAGAGCG |
NGG |
2 |
0.4114 |
Tier I |
| 3 |
NC_000070.6 |
4 |
135917763 |
+ |
Cnr2 |
NNNCTCCCTCGAAGAGAGAG |
NGG |
2 |
0.2 |
Tier II |
Other clones with same target sequence:
(none)
