Construct: sgRNA BRDN0001145487

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
AGGAACTTGGAACTGTCATG

Original Target:

Taxon:
Homo sapiens (human)
Gene:
CALM1 (801)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
75762

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000014.9 14 90401333 + CALM1 NNNAACTTGGAACTGTCATG NGG 0 1.0 Tier I
2 NC_000002.12 2 86133173 - PTCD3 NNNAACTTGGAACTGTGATG NAG 2 0.0153 Tier I
3 NC_000022.11 22 23237471 - BCR NNNAACTCGAAACTGTCATG NGG 2 0.9333 Tier II
4 NC_000002.12 2 149349729 + LYPD6 NNNAACTTGAAACTGACATG NGG 2 0.8485 Tier II
5 NC_000005.10 5 97130013 + LIX1 NNNAACTTGGAATTGTCATA NGG 2 0.6563 Tier II
6 NC_000015.10 15 90253096 + CIB1 NNNAACTTGAAATTGTCATG NGG 2 0.6533 Tier II
7 NC_000015.10 15 90253096 + TTLL13 NNNAACTTGAAATTGTCATG NGG 2 0.6533 Tier II
8 NC_000003.12 3 126098688 - SLC41A3 NNNAAATTGGAACAGTCATG NGG 2 0.5748 Tier II
9 NC_000008.11 8 1992879 + KBTBD11 NNNTACTTGGAGCTGTCATG NGG 2 0.4596 Tier II
10 NC_000008.11 8 103046033 - ATP6V1C1 NNNAACTTGTAACTGTAATG NGG 2 0.3792 Tier II
11 NC_000010.11 10 70163793 + SAR1A NNNAACTAGGAACTGTAATG NGG 2 0.3733 Tier II
12 NC_000002.12 2 173175336 - MAP3K20 NNNCACTTGGAACAGTCATG NGG 2 0.2185 Tier II
13 NC_000015.10 15 64502674 + ZNF609 NNNAACTGGGAACTGTCATG NAG 2 0.1901 Tier II
14 NC_000002.12 2 236501460 - DRC11 NNNAACTTTGAACTGGCATG NGG 2 0.1846 Tier II
15 NC_000008.11 8 101648142 - GRHL2 NNNAACTTGGAACTGTCATT NAG 2 0.1815 Tier II
16 NC_000003.12 3 183283986 - MCF2L2 NNNAACTTGAAACTTTCATG NGG 2 0.1333 Tier II
17 NC_000003.12 3 185550223 - LIPH NNNAACTTGGAACTTTCATT NGG 2 0.1 Tier II
18 NC_000016.10 16 2283711 - ABCA3 NNNAACTTGGACCTGTCCTG NGG 2 0.0501 Tier II
19 NC_000008.11 8 6516519 - ANGPT2 NNNAACTTGGAACTGTGTTG NGG 2 0.0294 Tier II
20 NC_000008.11 8 6516519 - MCPH1 NNNAACTTGGAACTGTGTTG NGG 2 0.0294 Tier II
21 NC_000004.12 4 151589233 + FHIP1A NNNAACTTGGAACTGTCAAG NTG 2 0.0111 Tier II
22 NC_000002.12 2 227272728 - COL4A3 NNNAACTTGGAACTGTCTTG NGT 2 0.0081 Tier II
23 NC_000023.11 X 95499710 + CALM1P1 NNNAACCTGGAACTGTCATG NGG 1 0.6875 Tier III
24 NC_000003.12 3 126098688 - ALDH1L1-AS1 NNNAAATTGGAACAGTCATG NGG 2 0.5748 Tier III
25 NC_000010.11 10 70163793 + CALM2P2 NNNAACTAGGAACTGTAATG NGG 2 0.3733 Tier III
26 NC_000007.14 7 55260149 - CALM1P2 NNNAACTTGGAACCATCATG NGG 2 0.2689 Tier III
27 NC_000008.11 8 92470286 - LOC105375639 NNNATCTTGGAACTGTCATT NGG 2 0.2545 Tier III
28 NC_000014.9 14 36156041 - PTCSC3 NNNAAGTTGGTACTGTCATG NGG 2 0.1538 Tier III
29 NC_000014.9 14 36156041 - LINC00609 NNNAAGTTGGTACTGTCATG NGG 2 0.1538 Tier III
30 NC_000008.11 8 102896717 + MAILR NNNAACTTGGAACTTACATG NGG 2 0.1299 Tier III
31 NC_000018.10 18 32909537 + LOC105372058 NNNATCTTGGAACTGTCACG NGG 2 0.1003 Tier III
32 NC_000001.11 1 87965262 - LOC101927871 NNNAACTTGGAACAGTGATG NGG 2 0.0364 Tier III
33 NC_000001.11 1 87965262 - LOC105378836 NNNAACTTGGAACAGTGATG NGG 2 0.0364 Tier III
34 NC_000001.11 1 189791554 + LINC01701 NNNAACTTTGAACTGTCATG NGT 2 0.0086 Tier III
35 NC_000002.12 2 227272728 - MFF-DT NNNAACTTGGAACTGTCTTG NGT 2 0.0081 Tier III
36 NC_000013.11 13 81543509 - LOC105370283 NNNAACTTGGAACTGTCATG NCT 2 0.0 Tier III
Download CSV

Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000077.6 11 68273156 + Ntn1 NNNAACATGGAACTGTCATG NGG 1 0.875 Tier II
2 NC_000081.6 15 89781746 - Syt10 NNNAACTTGGAGCTGTCATG NGG 1 0.7222 Tier II
3 NC_000071.6 5 134156258 - Rcc1l NNNAATTTGGAACTGTCATT NGG 2 0.65 Tier II
4 NC_000070.6 4 126348326 - Ago3 NNNAAACTGGAACTGTCATG NGG 2 0.6384 Tier II
5 NC_000070.6 4 49295642 + Plppr1 NNNAACATGGAACTGCCATG NGG 2 0.5833 Tier II
6 NC_000079.6 13 24332964 - Cmah NNNGACTTGGAACTGACATG NGG 2 0.5682 Tier II
7 NC_000068.7 2 90444610 + Ptprj NNNACCATGGAACTGTCATG NGG 2 0.4375 Tier II
8 NC_000068.7 2 13236908 - Rsu1 NNNAACTTTTAACTGTCATG NGG 2 0.4333 Tier II
9 NC_000075.6 9 46103689 - Sik3 NNNAACTGTGAACTGTCATG NGG 2 0.3911 Tier II
10 NC_000080.6 14 33229774 + Arhgap22 NNNAGCTTTGAACTGTCATG NGG 2 0.384 Tier II
11 NC_000075.6 9 75580414 - Tmod2 NNNAACTTAGAACTGTAATG NGG 2 0.3 Tier II
12 NC_000077.6 11 117701857 + Tnrc6c NNNAACTTAGCACTGTCATG NGG 2 0.2571 Tier II
13 NC_000080.6 14 27695715 - Erc2 NNNAACTTGGAACTGTCAGA NGG 2 0.2344 Tier II
14 NC_000070.6 4 3573156 + Tmem68 NNNAACATGGAACTGTCATG NAG 2 0.2269 Tier II
15 NC_000068.7 2 4120256 + Frmd4a NNNAATTTGGAACTGTCCTG NGG 2 0.1769 Tier II
16 NC_000073.6 7 133842045 - Fank1 NNNATCTTGGAACTGTCATC NGG 2 0.1558 Tier II
17 NC_000082.6 16 95720883 - Ets2 NNNAACTTGGCAATGTCATG NGG 2 0.1538 Tier II
18 NC_000080.6 14 24150066 + Dlg5 NNNAACTTGGAACTGGCATC NGG 2 0.1484 Tier II
19 NC_000068.7 2 129482784 - F830045P16Rik NNNAACGTGGAAGTGTCATG NGG 2 0.0802 Tier II
20 NC_000069.6 3 19527334 - Dnajc5b NNNAACTTGGAAGTTTCATG NGG 2 0.0195 Tier II
21 NC_000074.6 8 118639744 + Cdh13 NNNAACATGGAACTGTCATG NGT 2 0.0141 Tier II
22 NC_000086.7 X 168832348 + Arhgap6 NNNAACTTGGAAGTGTCATG NGC 2 0.003 Tier II
23 NC_000067.6 1 73993069 + Tns1 NNNAACTTGGAACTGTCATG NCA 2 0.0 Tier II
24 NC_000076.6 10 66831714 - Gm31416 NNNAACTAGGAGCTGTCATG NGG 2 0.5778 Tier III
25 NC_000082.6 16 54583117 - Gm46541 NNNAACTTTGAACTGTCATG NGG 1 0.5333 Tier III
26 NC_000074.6 8 88078394 - Gm2716 NNNGACTAGGAACTGTCATG NGG 2 0.5 Tier III
27 NC_000080.6 14 33229774 + Gm41130 NNNAGCTTTGAACTGTCATG NGG 2 0.384 Tier III
28 NC_000077.6 11 72931833 - Gm34704 NNNAACTTGGAACTGACCTG NGG 2 0.1732 Tier III
Download CSV

Other clones with same target sequence:

(none)

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