Construct: sgRNA BRDN0001145490

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
AACATGATGAAGTAGTATGT

Original Target:

Taxon:
Homo sapiens (human)
Gene:
RIOK3 (8780)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
76541

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000018.10 18 23464596 + RIOK3 NNNATGATGAAGTAGTATGT NGG 0 1.0 Tier I
2 NC_000012.12 12 82846041 - TMTC2 NNNATGAGGAAGTAGAATGT NGG 2 0.6667 Tier II
3 NC_000001.11 1 153179663 - SPRR2G NNNAGGAAGAAGTAGTATGT NGG 2 0.512 Tier II
4 NC_000020.11 20 14414895 - MACROD2 NNNATGAGGAAGAAGTATGT NGG 2 0.5077 Tier II
5 NC_000017.11 17 67958046 + BPTF NNNTTGAGGAAGTAGTATGT NGG 2 0.4667 Tier II
6 NC_000012.12 12 16212573 + SLC15A5 NNNATGATGGAGAAGTATGT NGG 2 0.3846 Tier II
7 NC_000014.9 14 67647853 + ARG2 NNNATCATGAAGTGGTATGT NGG 2 0.3182 Tier II
8 NC_000014.9 14 67647853 + GPHN NNNATCATGAAGTGGTATGT NGG 2 0.3182 Tier II
9 NC_000014.9 14 67647853 + VTI1B NNNATCATGAAGTGGTATGT NGG 2 0.3182 Tier II
10 NC_000009.12 9 15732967 - CCDC171 NNNATGATGAAGTCATATGT NGG 2 0.2017 Tier II
11 NC_000015.10 15 76877993 + SCAPER NNNAGGATGAAGGAGTATGT NGG 2 0.167 Tier II
12 NC_000012.12 12 32516637 + FGD4 NNNATGATGAAGCAGTCTGT NGG 2 0.1393 Tier II
13 NC_000018.10 18 58496403 - ALPK2 NNNATGATGAAGTTTTATGT NGG 2 0.0762 Tier II
14 NC_000004.12 4 87232388 - KLHL8 NNNATGATGAAATAGTATGT NGC 2 0.0207 Tier II
15 NC_000003.12 3 151311679 - GPR87 NNNATGATGAAGTAGAATGT NGC 2 0.0202 Tier II
16 NC_000003.12 3 151311679 - MED12L NNNATGATGAAGTAGAATGT NGC 2 0.0202 Tier II
17 NC_000001.11 1 43868172 + ST3GAL3 NNNATGATGAAATAGTATGT NGT 2 0.0151 Tier II
18 NC_000005.10 5 39113692 - FYB1 NNNATGATGAAATAGTATGT NGT 2 0.0151 Tier II
19 NC_000002.12 2 219909174 - LOC105373890 NNNATGATGAAGTAGAATGT NGG 1 0.9091 Tier III
20 NC_000013.11 13 74829063 + RIOK3P1 NNNATCATGAAGTAGTATGT NGG 1 0.6818 Tier III
21 NC_000001.11 1 153179663 - LOC101928009 NNNAGGAAGAAGTAGTATGT NGG 2 0.512 Tier III
22 NC_000006.12 6 81866463 + LINC02542 NNNATGATAAAGTAGTAAGT NGG 2 0.4286 Tier III
23 NC_000012.12 12 16212573 + LOC101928362 NNNATGATGGAGAAGTATGT NGG 2 0.3846 Tier III
24 NC_000005.10 5 101727105 + LOC105379102 NNNATGATGAAGTAGTAGTT NGG 2 0.2222 Tier III
25 NC_000005.10 5 124112035 + LINC01170 NNNATGATGAAGTAGTAAGT NAG 2 0.1728 Tier III
26 NC_000006.12 6 41008796 + LOC101929555 NNNATGATGAAGTGGGATGT NGG 2 0.1615 Tier III
27 NC_000013.11 13 97696061 + LOC105370324 NNNATGATGAAGTAGTCTTT NGG 2 0.1176 Tier III
28 NC_000020.11 20 33158368 + LOC105372714 NNNATGATGCAGTAGTGTGT NGG 2 0.0588 Tier III
29 NC_000008.11 8 29786640 - LINC02099 NNNATGATGAAGAAGTATGT NGT 2 0.0112 Tier III
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Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000084.6 18 12137317 + Riok3 NNNATGATGAAGTAGTATGT NGA 1 0.0694 Tier I
2 NC_000072.6 6 61288413 + Ccser1 NNNATCATGAAGTAGAATGT NGG 2 0.6198 Tier II
3 NC_000086.7 X 38542796 - Cul4b NNNATGCTGAAATAGTATGT NGG 2 0.4083 Tier II
4 NC_000086.7 X 151014876 + Gnl3l NNNATGATGAGGTAGTATGA NGG 2 0.3656 Tier II
5 NC_000071.6 5 143488518 - Daglb NNNATGATGATGTAGTATGT NGG 1 0.3077 Tier II
6 NC_000067.6 1 93423092 - Hdlbp NNNATGATCAACTAGTATGT NGG 2 0.2851 Tier II
7 NC_000068.7 2 139922070 - Tasp1 NNNATGATGAATTAGTAAGT NGG 2 0.2564 Tier II
8 NC_000067.6 1 54785500 - Ankrd44 NNNATCATGAAGTAGTATGT NAG 2 0.1768 Tier II
9 NC_000068.7 2 106248000 + Dcdc5 NNNATGATGATGTAGGATGT NGG 2 0.1065 Tier II
10 NC_000081.6 15 4555739 + Plcxd3 NNNATAATGAAGTAGTATGC NGG 2 0.0909 Tier II
11 NC_000074.6 8 81918537 - Inpp4b NNNATGATCAAGTATTATGT NGG 2 0.0769 Tier II
12 NC_000068.7 2 130925399 + Atrn NNNAAGATGAAGTAGTTTGT NGG 2 0.0667 Tier II
13 NC_000077.6 11 75566127 - Slc43a2 NNNATGATGAAGTAGCATGC NGG 2 0.0606 Tier II
14 NC_000077.6 11 31048338 - Asb3 NNNATGATGAAGTAGTGTGC NGG 2 0.016 Tier II
15 NC_000071.6 5 146872162 - Gm38748 NNNATGATTAAGAAGTATGT NGG 2 0.3692 Tier III
16 NC_000068.7 2 93144239 - Gm32627 NNNATGATGTAGGAGTATGT NGG 2 0.2302 Tier III
17 NC_000085.6 19 55134248 - Gm31418 NNNATGATGAGGTAGTATGC NGG 2 0.0591 Tier III
Download CSV

Other clones with same target sequence:

(none)