Construct: sgRNA BRDN0001145644

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
GGATGTATATCAGCATAAGG

Original Target:

Taxon:
Homo sapiens (human)
Gene:
STK3 (6788)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
75976

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000008.11 8 98706491 + STK3 NNNTGTATATCAGCATAAGG NGG 0 1.0 Tier I
2 NC_000020.11 20 44995234 - STK4 NNNTGGATATCAGCATAAGG NGG 1 0.5714 Tier I
3 NC_000001.11 1 169281340 + NME7 NNNTGCTTATCAGCATAAGG NGG 2 0.3977 Tier II
4 NC_000004.12 4 154330041 - DCHS2 NNNTGTATAGCAGCATAAAG NGG 2 0.3571 Tier II
5 NC_000014.9 14 88755555 + EML5 NNNTGTACATCAGCAGAAGG NGG 2 0.3462 Tier II
6 NC_000004.12 4 26127604 + RBPJ NNNAGTATATCAGCATAAAG NGG 2 0.3401 Tier II
7 NC_000021.9 21 36575674 + CLDN14 NNNTGTTTATCAGCATAAGT NGG 2 0.3062 Tier II
8 NC_000002.12 2 133169063 + NCKAP5 NNNAGTATTTCAGCATAAGG NGG 2 0.2857 Tier II
9 NC_000013.11 13 69936303 + KLHL1 NNNTGTATATCAGAATATGG NGG 2 0.175 Tier II
10 NC_000003.12 3 174125398 + NLGN1 NNNTGTATATGAGCACAAGG NGG 2 0.1667 Tier II
11 NC_000011.10 11 21201514 + NELL1 NNNTGTTTATCAGCTTAAGG NGG 2 0.0875 Tier II
12 NC_000013.11 13 77203171 - MYCBP2 NNNTGTTTATCAGCTTAAGG NGG 2 0.0875 Tier II
13 NC_000017.11 17 61825500 - BRIP1 NNNTGTTTATCAGCTTAAGG NGG 2 0.0875 Tier II
14 NC_000004.12 4 17663492 - FAM184B NNNTGTTTATCAGCATAAGG NGA 2 0.0304 Tier II
15 NC_000003.12 3 66294405 + SLC25A26 NNNTGTTTATCAGCATAAGG NGC 2 0.0097 Tier II
16 NC_000023.11 X 36110992 + CFAP47 NNNTGTTTATCAGCATAAGG NGT 2 0.0071 Tier II
17 NC_000002.12 2 231120345 + HTR2B NNNTTTATATCAGCATAAGG NGT 2 0.0048 Tier II
18 NC_000002.12 2 231120345 + PSMD1 NNNTTTATATCAGCATAAGG NGT 2 0.0048 Tier II
19 NC_000001.11 1 86101273 + COL24A1 NNNTGTATATCAGCTTAAGG NGC 2 0.0044 Tier II
20 NC_000016.10 16 74880071 - WDR59 NNNTGTATATCATGATAAGG NGG 2 0.0 Tier II
21 NC_000003.12 3 182001300 + LINC01206 NNNTGAATATCAGCATAAGG NGG 1 0.8667 Tier III
22 NC_000018.10 18 42383561 + LINC00907 NNNTGTATATCAGCATAATG NGG 1 0.6667 Tier III
23 NC_000013.11 13 78559612 + OBI1-AS1 NNNTGTATATCAACATAGGG NGG 2 0.3692 Tier III
24 NC_000002.12 2 56597128 - LOC101927213 NNNTGTATACCACCATAAGG NGG 2 0.2246 Tier III
25 NC_000006.12 6 2290811 - GMDS-DT NNNTGTTTATCAGCTTAAGG NGG 2 0.0875 Tier III
26 NC_000010.11 10 95166091 - LOC107984257 NNNTGTTTATCAGCTTAAGG NGG 2 0.0875 Tier III
Download CSV

Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000081.6 15 35072454 + Stk3 NNNTGTATATCAGCATAAGG NGG 0 1.0 Tier I
2 NC_000068.7 2 164096883 - Stk4 NNNTGGATATCAGCATATGG NGG 2 0.2857 Tier I
3 NC_000069.6 3 122154440 + Abca4 NNNTGTACATCAGCATAAGA NGG 2 0.9375 Tier II
4 NC_000075.6 9 35102104 + St3gal4 NNNTGTATATCAGCAAAAAG NGG 2 0.6494 Tier II
5 NC_000080.6 14 75033720 + Rubcnl NNNTGTAGAGCAGCATAAGG NGG 2 0.3667 Tier II
6 NC_000074.6 8 108676958 + Zfhx3 NNNTGTATATCTCCATAAGG NGG 2 0.1404 Tier II
7 NC_000072.6 6 80306108 + Lrrtm4 NNNTGTATATCTGCTTAAGG NGG 2 0.0667 Tier II
8 NC_000074.6 8 70739223 - Pde4c NNNTGTATATGAGCATAAGG NAG 2 0.0648 Tier II
9 NC_000077.6 11 119404556 + Rnf213 NNNTGTATATCAGCATAAAG NGT 2 0.0115 Tier II
10 NC_000074.6 8 127400014 + Pard3 NNNTGTATATCAGCATAAGT NGT 2 0.0113 Tier II
11 NC_000084.6 18 56557956 - Aldh7a1 NNNTGTATATCAGCATAAGG NTA 2 0.0 Tier II
12 NC_000072.6 6 31222698 + 2210408F21Rik NNNTGTATATCTGCATAAGG NTG 2 0.013 Tier III
Download CSV

Other clones with same target sequence:

(none)

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