Construct: sgRNA BRDN0001145716
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- AGTGTTGACGAGCGTAAGTG
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- MAP3K13 (9175)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 76904
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000003.12 |
3 |
185428799 |
+ |
MAP3K13 |
NNNGTTGACGAGCGTAAGTG |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000008.11 |
8 |
119083088 |
- |
COLEC10 |
NNNGTTGACGAGTGTAAGTT |
NGG |
2 |
0.49 |
Tier II |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000078.6 |
12 |
76280643 |
+ |
Mthfd1 |
NNNGTTGACGAGCGTCAGTG |
NTG |
2 |
0.0 |
Tier I |
| 2 |
NC_000067.6 |
1 |
135569864 |
- |
Nav1 |
NNNGTTGAAGAGCGTAAGTG |
NGG |
1 |
0.8571 |
Tier II |
| 3 |
NC_000072.6 |
6 |
113605080 |
- |
Brk1 |
NNNGCTGACGAGCGCAAGTG |
NGG |
2 |
0.2727 |
Tier II |
| 4 |
NC_000067.6 |
1 |
58454734 |
+ |
Nif3l1 |
NNNGTAGACGTGCGTAAGTG |
NGG |
2 |
0.2667 |
Tier II |
| 5 |
NC_000068.7 |
2 |
80427805 |
+ |
Frzb |
NNNGTTGACCAGAGTAAGTG |
NGG |
2 |
0.1538 |
Tier II |
Other clones with same target sequence:
(none)
