Construct: sgRNA BRDN0001145840
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- TGCGGCGTAATGCTTGAAAG
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- NO_SITE control
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 80185
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000007.14 |
7 |
71289800 |
+ |
GALNT17 |
NNNGGAGTATTGCTTGAAAG |
NGG |
2 |
0.8193 |
Tier II |
| 2 |
NC_000021.9 |
21 |
32764891 |
- |
PAXBP1 |
NNNGAAGTAATGCTTGAAAG |
NGG |
2 |
0.8048 |
Tier II |
| 3 |
NC_000001.11 |
1 |
165553702 |
+ |
LRRC52 |
NNNGGGGTAATCCTTGAAAG |
NGG |
2 |
0.2647 |
Tier II |
| 4 |
NC_000012.12 |
12 |
4531671 |
- |
C12orf4 |
NNNGGCGTTATGCCTGAAAG |
NGG |
2 |
0.1714 |
Tier II |
| 5 |
NC_000001.11 |
1 |
165553702 |
+ |
LRRC52-AS1 |
NNNGGGGTAATCCTTGAAAG |
NGG |
2 |
0.2647 |
Tier III |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000067.6 |
1 |
129445895 |
- |
Thsd7b |
NNNGGCAAAATGCTTGAAAG |
NGG |
2 |
0.8 |
Tier II |
Other clones with same target sequence:
(none)
