Construct: sgRNA BRDN0001146011

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
AAAAGAGAAAAGAGAAACGT

Original Target:

Taxon:
Homo sapiens (human)
Gene:
CDK11B (984)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
77065

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000001.11 1 1652470 - CDK11B NNNAGAGAAAAGAGAAACGT NGG 0 1.0 Tier I
2 NC_000001.11 1 1719359 - CDK11A NNNAGAGAAAAGAAAAATGT NGG 2 0.4821 Tier I
3 NC_000016.10 16 68538845 - ZFP90 NNNAGAGAAAAAAGAAACTT NGG 2 0.6222 Tier II
4 NC_000022.11 22 38984874 - APOBEC3B NNNAGAGAAAAAAGAAATGT NGG 2 0.6 Tier II
5 NC_000019.10 19 46302903 + HIF3A NNNAAAGAAAAGAGAAACTT NGG 2 0.5778 Tier II
6 NC_000004.12 4 173470092 - SCRG1 NNNAGAAAAAAGAGAAACGA NGG 2 0.5625 Tier II
7 NC_000002.12 2 27478815 + IFT172 NNNAGAAAAAAGAGAAAAGT NGG 2 0.5385 Tier II
8 NC_000016.10 16 77425277 + ADAMTS18 NNNAAAGAAAAGAGAAACGA NGG 2 0.4875 Tier II
9 NC_000008.11 8 113241079 - CSMD3 NNNAAAGAAAAGAGAAAAGT NGG 2 0.4667 Tier II
10 NC_000001.11 1 156267455 + SMG5 NNNAGAGAAAAGAGGAACAT NGG 2 0.4643 Tier II
11 NC_000023.11 X 105633074 + IL1RAPL2 NNNAGAGAAAAGAGAAATAT NGG 2 0.4592 Tier II
12 NC_000001.11 1 53051676 + SCP2 NNNAGAATAAAGAGAAACGT NGG 2 0.4286 Tier II
13 NC_000002.12 2 28274864 + BABAM2 NNNTGAGAAAAGAGAAACTT NGG 2 0.4242 Tier II
14 NC_000010.11 10 77539162 - KCNMA1 NNNACAGAAAAGAGAAAAGT NGG 2 0.4231 Tier II
15 NC_000017.11 17 39738496 - GRB7 NNNACAGAAAAGAGAAAAGT NGG 2 0.4231 Tier II
16 NC_000001.11 1 8631152 - RERE NNNGGAGAAAAGAGAAATGT NGG 2 0.4018 Tier II
17 NC_000012.12 12 90987880 - EPYC NNNAAAGAAAAGAGAAACCT NGG 2 0.3885 Tier II
18 NC_000006.12 6 35360314 + PPARD NNNAGTGAAAAGAGAAAAGT NGG 2 0.3846 Tier II
19 NC_000009.12 9 92389792 - OGN NNNAGATAAAAGAGAAACTT NGG 2 0.381 Tier II
20 NC_000009.12 9 92389792 - CENPP NNNAGATAAAAGAGAAACTT NGG 2 0.381 Tier II
21 NC_000003.12 3 169598905 + MECOM NNNAGAGAAGAGAGAAACTT NGG 2 0.3704 Tier II
22 NC_000023.11 X 78315039 + CYSLTR1 NNNAGACAAAAGAGAAAAGT NGG 2 0.3702 Tier II
23 NC_000004.12 4 89287797 + GPRIN3 NNNAGAGAAGAGAGAAATGT NGG 2 0.3571 Tier II
24 NC_000005.10 5 112158168 + EPB41L4A NNNAGAGAAAAGAGGAAAGT NGG 2 0.35 Tier II
25 NC_000003.12 3 174009762 + NLGN1 NNNGGAGAAAAGAGAAAAGT NGG 2 0.3365 Tier II
26 NC_000006.12 6 53903508 - LRRC1 NNNGGAGAAAAGAGAAAAGT NGG 2 0.3365 Tier II
27 NC_000009.12 9 76459950 - GCNT1 NNNAGAGGAAAGAGAAACCT NGG 2 0.3287 Tier II
28 NC_000001.11 1 170695807 - PRRX1 NNNAGAGAAAAGAGAAAAGA NGG 2 0.3029 Tier II
29 NC_000005.10 5 138901159 - CTNNA1 NNNAGAGAAAAGAGAAAAGA NGG 2 0.3029 Tier II
30 NC_000005.10 5 177707357 + FAM153A NNNAGACCAAAGAGAAACGT NGG 2 0.2946 Tier II
31 NC_000011.10 11 89495935 + NOX4 NNNAGAGAAAAGAGGAACCT NGG 2 0.2914 Tier II
32 NC_000014.9 14 33523352 + NPAS3 NNNAGAGAAAGGAGAAACCT NGG 2 0.2914 Tier II
33 NC_000001.11 1 111693613 + RAP1A NNNAAAGAAATGAGAAACGT NGG 2 0.2667 Tier II
34 NC_000004.12 4 97999412 + STPG2 NNNAGAGAAAAGAGAAACCA NGG 2 0.2522 Tier II
35 NC_000014.9 14 51826837 + GNG2 NNNAGAGAAAAGAGAAACCA NGG 2 0.2522 Tier II
36 NC_000004.12 4 106099805 - TBCK NNNAGAGAAAAGACAAAAGT NGG 2 0.2308 Tier II
37 NC_000004.12 4 100474522 + EMCN NNNAGAGAAATGAAAAACGT NGG 2 0.2308 Tier II
38 NC_000011.10 11 7437176 - SYT9 NNNAGAGAAATGAGAAACTT NGG 2 0.2051 Tier II
39 NC_000002.12 2 24570882 + NCOA1 NNNAGAAAAAAGAGAAACGG NGG 2 0.1765 Tier II
40 NC_000013.11 13 98383957 - FARP1 NNNAGAGAAAAGAGGAACGT NAG 2 0.1685 Tier II
41 NC_000012.12 12 1328606 - ERC1 NNNAGAGAAAGGAGAAACGT NAG 2 0.1685 Tier II
42 NC_000019.10 19 13227801 + CACNA1A NNNAGAGAAAAGAGAAAAGT NAG 2 0.1396 Tier II
43 NC_000017.11 17 17985036 - DRC3 NNNAGAGAAATGAGAAACCT NGG 2 0.1379 Tier II
44 NC_000019.10 19 8914422 + MUC16 NNNAGAGAAATGAGAAACCT NGG 2 0.1379 Tier II
45 NC_000019.10 19 51313565 - IGLON5 NNNAGAAAAAAGAGAAAGGT NGG 2 0.1333 Tier II
46 NC_000001.11 1 220127420 + IARS2 NNNAGAGAAAGGAGAGACGT NGG 2 0.125 Tier II
47 NC_000007.14 7 48343514 - ABCA13 NNNAGAGAAAAGAGAACCTT NGG 2 0.1176 Tier II
48 NC_000014.9 14 22574060 - DAD1 NNNAGAGAAAAGAGAACCTT NGG 2 0.1176 Tier II
49 NC_000014.9 14 63277853 + RHOJ NNNAGAGAAAAGAGAGAAGT NGG 2 0.1036 Tier II
50 NC_000006.12 6 4039862 - PRP4K NNNAGAGAAAAGAGAAAGAT NGG 2 0.0952 Tier II
51 NC_000003.12 3 97662153 + EPHA6 NNNAGAGAAAAGAGAAAAGG NGG 2 0.095 Tier II
52 NC_000011.10 11 3934009 - STIM1 NNNAGAGAAAAGAGAATCTT NGG 2 0.0889 Tier II
53 NC_000007.14 7 108088671 - LAMB4 NNNAGAGAGAAGAGAAAGGT NGG 2 0.0889 Tier II
54 NC_000001.11 1 117172193 + VTCN1 NNNAGAGAAAAAAGAAACGC NGG 2 0.0848 Tier II
55 NC_000006.12 6 47994224 + PTCHD4 NNNTGAGAAAAGAGAAAGGT NGG 2 0.0848 Tier II
56 NC_000017.11 17 15931198 + ADORA2B NNNAAAGAAAAGAGAAACGC NGG 2 0.0788 Tier II
57 NC_000015.10 15 53861835 - UNC13C NNNAGAGACAAGAGAAAGGT NGG 2 0.0762 Tier II
58 NC_000003.12 3 124286195 - KALRN NNNAGAGAAAAGAGAAAGGA NGG 2 0.075 Tier II
59 NC_000011.10 11 43607240 + HSD17B12 NNNAGAGAAAAGAGAAAGGA NGG 2 0.075 Tier II
60 NC_000002.12 2 102640000 + SLC9A2 NNNAGAGAAAACAGAAAGGT NGG 2 0.0706 Tier II
61 NC_000006.12 6 35962800 - SLC26A8 NNNAGAGAAAAGAGAAACGT NGA 1 0.0694 Tier II
62 NC_000001.11 1 183099934 - LAMC1 NNNAGAGAACAGAGAAGCGT NGG 2 0.0588 Tier II
63 NC_000003.12 3 33318347 - FBXL2 NNNAGAGAAAAGAGAAACTT NGA 2 0.0463 Tier II
64 NC_000019.10 19 1163262 + SBNO2 NNNAGAGAAAAGAGGAACGT NGA 2 0.0451 Tier II
65 NC_000023.11 X 101369879 - BTK NNNAGAGAAAGGAGAAACGT NGA 2 0.0451 Tier II
66 NC_000003.12 3 165082385 - SI NNNAGAGAAAAGAGAAAAGT NGA 2 0.0374 Tier II
67 NC_000016.10 16 10104287 + GRIN2A NNNAGAGAAAAGAGAAAAGT NGA 2 0.0374 Tier II
68 NC_000008.11 8 68044741 + PREX2 NNNAGAGAAAAGAGAAAGGT NAG 2 0.0346 Tier II
69 NC_000002.12 2 196429660 + HECW2 NNNAGAGAAAAGAGAAACTT NTG 2 0.026 Tier II
70 NC_000009.12 9 16545959 + BNC2 NNNAGAGAAAAGAGAAACTT NTG 2 0.026 Tier II
71 NC_000001.11 1 49250249 + AGBL4 NNNAGAGAAAAGAGAAATGT NTG 2 0.025 Tier II
72 NC_000022.11 22 48591163 - TAFA5 NNNAGAGAAAAGAGAAATGT NTG 2 0.025 Tier II
73 NC_000007.14 7 38856616 + VPS41 NNNAGAGAAAAGAGAAAGGG NGG 2 0.0235 Tier II
74 NC_000005.10 5 36120972 - LMBRD2 NNNAGAGAAAAGAGAAAAGT NTG 2 0.021 Tier II
75 NC_000002.12 2 143307657 + ARHGAP15 NNNAGAGAAAAGAGAAACTT NGC 2 0.0148 Tier II
76 NC_000014.9 14 23057074 + CDH24 NNNAGAGAAAAGAGAAAGGC NGG 2 0.0121 Tier II
77 NC_000023.11 X 125109648 + TENM1 NNNAGAGAAAAGAGAAACAT NGT 2 0.0115 Tier II
78 NC_000007.14 7 140519808 + DENND2A NNNAGAGAAAAGAGAAACCT NGT 2 0.0072 Tier II
79 NC_000012.12 12 10634881 - STYK1 NNNAGAGAAAAGAGAAACGC NGA 2 0.0063 Tier II
80 NC_000011.10 11 7575435 - PPFIBP2 NNNAGAGAAAAGAGAAAGGT NGC 2 0.003 Tier II
81 NC_000008.11 8 103956025 + RIMS2 NNNAGAGAAAAAAGATACGT NGG 2 0.0 Tier II
82 NC_000012.12 12 6584383 + CHD4 NNNAGAGAAAAGAGATACGT NTG 2 0.0 Tier II
83 NC_000021.9 21 42561387 - SLC37A1 NNNAGTGAAAAGAGACACGT NGG 2 0.0 Tier II
84 NC_000004.12 4 173470092 - LOC112267917 NNNAGAAAAAAGAGAAACGA NGG 2 0.5625 Tier III
85 NC_000002.12 2 107551308 - LINC01886 NNNAGAGAAAAGGAAAACGT NGG 2 0.4891 Tier III
86 NC_000009.12 9 23617753 + LOC101929563 NNNAGAGAAAAGAAAAATGT NGG 2 0.4821 Tier III
87 NC_000008.11 8 113241079 - LOC107986966 NNNAAAGAAAAGAGAAAAGT NGG 2 0.4667 Tier III
88 NC_000007.14 7 153392754 + LOC105375577 NNNGGAGAAAAGAGAAACAT NGG 2 0.4464 Tier III
89 NC_000002.12 2 28274864 + LOC124907745 NNNTGAGAAAAGAGAAACTT NGG 2 0.4242 Tier III
90 NC_000002.12 2 180122811 - EPCART NNNAGAGAAAAAAGAAACCT NGG 2 0.4184 Tier III
91 NC_000018.10 18 154074 + LOC105371951 NNNAGAGAAGAGAGAAACAT NGG 2 0.3968 Tier III
92 NC_000018.10 18 31361071 - DSG1-AS1 NNNAGGGAAAAGAGAAAAGT NGG 2 0.3846 Tier III
93 NC_000018.10 18 44475960 - LINC01478 NNNGGAGAAAAGAGAAAAGT NGG 2 0.3365 Tier III
94 NC_000005.10 5 65090329 + LOC107986419 NNNAGAGAAAAGTGAAACGT NGG 1 0.3 Tier III
95 NC_000005.10 5 177707357 + LOC107986489 NNNAGACCAAAGAGAAACGT NGG 2 0.2946 Tier III
96 NC_000014.9 14 33523352 + LOC124903299 NNNAGAGAAAGGAGAAACCT NGG 2 0.2914 Tier III
97 NC_000002.12 2 12453230 - MIR3681HG NNNAGAGAAAAGACAAATGT NGG 2 0.2755 Tier III
98 NC_000002.12 2 12453230 - LOC105373431 NNNAGAGAAAAGACAAATGT NGG 2 0.2755 Tier III
99 NC_000004.12 4 100474522 + LOC124900740 NNNAGAGAAATGAAAAACGT NGG 2 0.2308 Tier III
100 NC_000006.12 6 96370101 - UFL1-AS1 NNNATAGAAAAGAGAAACAT NGG 2 0.2143 Tier III
101 NC_000021.9 21 15425826 - LOC101927745 NNNAGAGAAATGAGAAATGT NGG 2 0.1978 Tier III
102 NC_000021.9 21 15425826 - LOC124905055 NNNAGAGAAATGAGAAATGT NGG 2 0.1978 Tier III
103 NC_000002.12 2 133923721 + LOC105373627 NNNACAGAAAAGAGAAGCGT NGG 2 0.1387 Tier III
104 NC_000017.11 17 17985036 - LOC107984989 NNNAGAGAAATGAGAAACCT NGG 2 0.1379 Tier III
105 NC_000004.12 4 151912566 + LOC127898557 NNNAGAGGAAAGAGAAACGG NGG 2 0.1294 Tier III
106 NC_000001.11 1 19022330 + LOC105376815 NNNAGAGAAAAGAGAGAAGT NGG 2 0.1036 Tier III
107 NC_000007.14 7 108088671 - LOC105375446 NNNAGAGAGAAGAGAAAGGT NGG 2 0.0889 Tier III
108 NC_000008.11 8 64189519 + LINC01414 NNNAGAGAAAAGAGAAAGGA NGG 2 0.075 Tier III
109 NC_000009.12 9 129445510 - LOC105376291 NNNAGAGAAAAGAGAAAGGA NGG 2 0.075 Tier III
110 NC_000007.14 7 143509639 - EPHA1-AS1 NNNAGAGAAAAGAGAAACTT NGA 2 0.0463 Tier III
111 NC_000002.12 2 8135738 + LINC00299 NNNGGAGAAAAGAGAAACGT NGA 2 0.0434 Tier III
112 NC_000009.12 9 7345541 - LOC102723994 NNNAGAGAAAAGAGAAAGGT NAG 2 0.0346 Tier III
113 NC_000009.12 9 7345541 - LOC105375970 NNNAGAGAAAAGAGAAAGGT NAG 2 0.0346 Tier III
114 NC_000002.12 2 196429660 + LOC105373822 NNNAGAGAAAAGAGAAACTT NTG 2 0.026 Tier III
115 NC_000022.11 22 48591163 - LOC124900480 NNNAGAGAAAAGAGAAATGT NTG 2 0.025 Tier III
116 NC_000014.9 14 44177308 + LINC02307 NNNAGAGAAAAGAGAAACGT NGT 1 0.0161 Tier III
117 NC_000005.10 5 23984139 - LINC02899 NNNAGAGAAAAGAGAAAGGC NGG 2 0.0121 Tier III
118 NC_000011.10 11 7575435 - LOC105376535 NNNAGAGAAAAGAGAAAGGT NGC 2 0.003 Tier III
119 NC_000012.12 12 6584383 + CHD4-AS1 NNNAGAGAAAAGAGATACGT NTG 2 0.0 Tier III
Download CSV

Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000070.6 4 155628793 + Cdk11b NNNAAAGAAAAGAGAAACGT NGA 2 0.0602 Tier I
2 NC_000073.6 7 52003970 - Svip NNNAGAGAAAAGAGAAAAGC NGG 2 0.049 Tier I
3 NC_000071.6 5 123611875 - Clip1 NNNAGAGAAAACAGAAACGC NGG 2 0.0481 Tier I
4 NC_000069.6 3 10421330 + Snx16 NNNAGAAAAAAGAGAAACTT NGG 2 0.6667 Tier II
5 NC_000080.6 14 93867163 + Pcdh9 NNNAGAGAAAAAAGAAATGT NGG 2 0.6 Tier II
6 NC_000071.6 5 113982557 - Ssh1 NNNAGAAACAAGAGAAACGT NGG 2 0.5714 Tier II
7 NC_000079.6 13 91030423 - Atg10 NNNAGAGAAAAGAAAAACAT NGG 2 0.5357 Tier II
8 NC_000077.6 11 6405882 - Zmiz2 NNNACAGAAAAGAGAAACTT NGG 2 0.5238 Tier II
9 NC_000080.6 14 36877931 + Ccser2 NNNACAGAAAAGAGAAACTT NGG 2 0.5238 Tier II
10 NC_000082.6 16 30974857 - Xxylt1 NNNAAAGAAGAGAGAAACGT NGG 2 0.4815 Tier II
11 NC_000073.6 7 76916352 - Agbl1 NNNTGAGAAAAGAAAAACGT NGG 2 0.4773 Tier II
12 NC_000072.6 6 46717867 + Cntnap2 NNNAAAGAAAAGAGAAAAGT NGG 2 0.4667 Tier II
13 NC_000086.7 X 86810494 + Il1rapl1 NNNAAAGAAAAGAGAAAAGT NGG 2 0.4667 Tier II
14 NC_000075.6 9 69317334 - Rora NNNAGGGAAAAGAGAAATGT NGG 2 0.4592 Tier II
15 NC_000084.6 18 36075384 - Nrg2 NNNAGAGAGAAGAGAAATGT NGG 2 0.4286 Tier II
16 NC_000074.6 8 119130508 + Cdh13 NNNAGACAAGAGAGAAACGT NGG 2 0.3819 Tier II
17 NC_000084.6 18 37962409 - Fchsd1 NNNAGAGAAAAGAGAAACTA NGG 2 0.375 Tier II
18 NC_000072.6 6 35028514 - Cnot4 NNNAGAGAAGAGGGAAACGT NGG 2 0.3623 Tier II
19 NC_000072.6 6 27984718 - Grm8 NNNAGAGAAAAGGGAAAAGT NGG 2 0.3512 Tier II
20 NC_000072.6 6 77117530 + Ctnna2 NNNAGAGAAAAGGGAAAAGT NGG 2 0.3512 Tier II
21 NC_000078.6 12 83650471 - Rbm25 NNNAGAGAAAAGGGAAAAGT NGG 2 0.3512 Tier II
22 NC_000083.6 17 65429843 + Tmem232 NNNGGAGAAAAGAGAAAAGT NGG 2 0.3365 Tier II
23 NC_000072.6 6 111249785 - Grm7 NNNAGAGAAAAGAGAAAAGA NGG 2 0.3029 Tier II
24 NC_000075.6 9 21651312 - Smarca4 NNNAGAGAAAAGAGAAAAGA NGG 2 0.3029 Tier II
25 NC_000075.6 9 40933670 - Jhy NNNAGAGAAAAGAGAAAAGA NGG 2 0.3029 Tier II
26 NC_000084.6 18 65723423 + Oacyl NNNAGAGAAAAGAGAAAAGA NGG 2 0.3029 Tier II
27 NC_000067.6 1 70885430 - Vwc2l NNNAGAGAAAGGAGAAACCT NGG 2 0.2914 Tier II
28 NC_000073.6 7 130716682 - Tacc2 NNNAGAGAAATAAGAAACGT NGG 2 0.2872 Tier II
29 NC_000078.6 12 4158500 + Adcy3 NNNGGAGAAAAGAGAAACCT NGG 2 0.2802 Tier II
30 NC_000083.6 17 67805502 - Lama1 NNNAGAGAAAGTAGAAACGT NGG 2 0.25 Tier II
31 NC_000078.6 12 100031638 - Kcnk13 NNNAGAGAAAACAGAAACCT NGG 2 0.2373 Tier II
32 NC_000072.6 6 5774808 - Dync1i1 NNNAGAGTAAAGAGAAAAGT NGG 2 0.2308 Tier II
33 NC_000075.6 9 32127901 - Arhgap32 NNNAGAGAAATGAGAAACAT NGG 2 0.2198 Tier II
34 NC_000072.6 6 72327368 + Usp39 NNNAGAGAAATGAGAAATGT NGG 2 0.1978 Tier II
35 NC_000072.6 6 116654635 - Rassf4 NNNAGAGAAATGAGAAATGT NGG 2 0.1978 Tier II
36 NC_000071.6 5 125775700 - Tmem132b NNNAGAGAAAAGAAAAACGT NAG 2 0.1944 Tier II
37 NC_000072.6 6 92896556 + Adamts9 NNNAGAGAACAGAGAAAAGT NGG 2 0.1795 Tier II
38 NC_000081.6 15 88895834 + Ttll8 NNNAGATAAAAGAGAAACGT NAG 2 0.1481 Tier II
39 NC_000070.6 4 144961097 - Vps13d NNNAGAGAAAAGAGCAAAGT NGG 2 0.1469 Tier II
40 NC_000079.6 13 94115014 - Lhfpl2 NNNAGAGAAAAGAAAGACGT NGG 2 0.1442 Tier II
41 NC_000078.6 12 20451129 + Gm29758 NNNAGAGGAAAGAGAAACGG NGG 2 0.1294 Tier II
42 NC_000078.6 12 20451129 + Gm10479 NNNAGAGGAAAGAGAAACGG NGG 2 0.1294 Tier II
43 NC_000073.6 7 76359922 + Agbl1 NNNAGAGAAAAAAGAAAGGT NGG 2 0.1244 Tier II
44 NC_000072.6 6 149419278 + Bicd1 NNNAGAGAAAAGAGAGATGT NGG 2 0.1236 Tier II
45 NC_000079.6 13 34991397 - Eci2 NNNAGAGAAAAGAGCAACCT NGG 2 0.1223 Tier II
46 NC_000067.6 1 97460953 + Gm7135 NNNAGAGAAAAGAGAAACTG NGG 2 0.1176 Tier II
47 NC_000069.6 3 65197887 + Kcnab1 NNNAGAGAAAAGAGAAACTG NGG 2 0.1176 Tier II
48 NC_000080.6 14 37105841 - 2610528A11Rik NNNAGAGAAAAGAGAAACTG NGG 2 0.1176 Tier II
49 NC_000071.6 5 116057854 - Tmem233 NNNAGAGAAAAGGGAAACGG NGG 2 0.1151 Tier II
50 NC_000077.6 11 20332631 + Slc1a4 NNNAGATAAAAGAGAGACGT NGG 2 0.1099 Tier II
51 NC_000071.6 5 115986491 - Cit NNNAGAGAAAAGAGAGACGA NGG 2 0.1082 Tier II
52 NC_000076.6 10 23114874 + Eya4 NNNAGAGAAAAGAGAAAAGG NGG 2 0.095 Tier II
53 NC_000084.6 18 10731336 - Mib1 NNNAGAGAAAAGAGAAAAGG NGG 2 0.095 Tier II
54 NC_000073.6 7 100416790 - C2cd3 NNNAGAGAGAAGAGAAAGGT NGG 2 0.0889 Tier II
55 NC_000075.6 9 97459096 + Clstn2 NNNAGAGAAACGAGAGACGT NGG 2 0.0769 Tier II
56 NC_000068.7 2 157220635 - Mroh8 NNNAGAGAAAAGAGAAAGGA NGG 2 0.075 Tier II
57 NC_000071.6 5 63752360 - Nwd2 NNNAGAGAAGAGAGAAAGGT NGG 2 0.0741 Tier II
58 NC_000075.6 9 23343235 - Bmper NNNAGAGAAAAGAGAAACAC NGG 2 0.0649 Tier II
59 NC_000068.7 2 165492859 + Trp53rka NNNAGAGAAATGAGAAACGG NGG 2 0.0543 Tier II
60 NC_000070.6 4 104416171 + Dab1 NNNAGAGGAAAGAGAAACGT NGA 2 0.0509 Tier II
61 NC_000077.6 11 69196737 + Alox8 NNNAGAGAAAAGAGAAACGG NAG 2 0.0458 Tier II
62 NC_000081.6 15 36478115 + Ankrd46 NNNAGAGAAAAGAGAACCGT NAG 2 0.0458 Tier II
63 NC_000080.6 14 77582963 + Enox1 NNNAGAGAAAAGAGAAATGT NGA 2 0.0446 Tier II
64 NC_000084.6 18 75593525 + Ctif NNNAGAGAAAAGAGAAACCC NGG 2 0.0408 Tier II
65 NC_000069.6 3 33141584 - Pex5l NNNAGAGAAAAGAGAAACAT NTG 2 0.0278 Tier II
66 NC_000077.6 11 107303201 - Pitpnc1 NNNAGAGAAAAGAGAAATGT NTG 2 0.025 Tier II
67 NC_000080.6 14 123303115 - Nalcn NNNAGAGAAAAGAGAAAGGG NGG 2 0.0235 Tier II
68 NC_000081.6 15 5197421 - Ttc33 NNNAGAGAAAAGAGAAGGGT NGG 2 0.0235 Tier II
69 NC_000072.6 6 56170703 + Pde1c NNNAGAGAAAAGAGAAAAGT NTG 2 0.021 Tier II
70 NC_000072.6 6 119801184 + Erc1 NNNAGAGAAAAGAGAAACCT NGT 2 0.0072 Tier II
71 NC_000072.6 6 80210848 - Lrrtm4 NNNAGAGAAAAGAGAAACGT NTC 2 0.0 Tier II
72 NC_000075.6 9 53812328 - Slc35f2 NNNAGAGAAAAGAGAAACGT NAT 2 0.0 Tier II
73 NC_000083.6 17 73893734 + Xdh NNNAGAGAAAAGAGAAACGT NTA 2 0.0 Tier II
74 NC_000080.6 14 122767194 + Pcca NNNAGAGAAAAGAGACACGT NAG 2 0.0 Tier II
75 NC_000077.6 11 5333927 - Znrf3 NNNAGAGAAAAGGGACACGT NGG 2 0.0 Tier II
76 NC_000069.6 3 128723036 + Gm40148 NNNAGAGAAAAGAGAAACAT NGG 1 0.7143 Tier III
77 NC_000080.6 14 106265303 + Gm36107 NNNAGAGAAAAGAGAAAAGT NGG 1 0.5385 Tier III
78 NC_000069.6 3 54519446 - Gm31154 NNNAGAGAAAAGAAAAACAT NGG 2 0.5357 Tier III
79 NC_000082.6 16 30974857 - Gm15742 NNNAAAGAAGAGAGAAACGT NGG 2 0.4815 Tier III
80 NC_000069.6 3 17579846 - Gm30340 NNNAGAGAGAAGAGAAACTT NGG 2 0.4444 Tier III
81 NC_000084.6 18 36075384 - Gm41694 NNNAGAGAGAAGAGAAATGT NGG 2 0.4286 Tier III
82 NC_000074.6 8 80392782 - Gm30605 NNNAGAGAAAAGAGAAAAGA NGG 2 0.3029 Tier III
83 NC_000076.6 10 91258963 - Gm18705 NNNAGAGAAAAGAGAAAAGA NGG 2 0.3029 Tier III
84 NC_000067.6 1 70885430 - Gm29906 NNNAGAGAAAGGAGAAACCT NGG 2 0.2914 Tier III
85 NC_000073.6 7 130716682 - Gm34283 NNNAGAGAAATAAGAAACGT NGG 2 0.2872 Tier III
86 NC_000075.6 9 95443472 + Gm32133 NNNAGAGTTAAGAGAAACGT NGG 2 0.2571 Tier III
87 NC_000084.6 18 8680213 - Gm35180 NNNAGAGAAATGAGAAATGT NGG 2 0.1978 Tier III
88 NC_000081.6 15 88895834 + Gm38643 NNNAGATAAAAGAGAAACGT NAG 2 0.1481 Tier III
89 NC_000070.6 4 17558557 + Gm30092 NNNAGAGAAAAGAGAAAAGT NAG 2 0.1396 Tier III
90 NC_000078.6 12 21744362 - 6030426L16Rik NNNAGAGGAAAGAGAAACGG NGG 2 0.1294 Tier III
91 NC_000078.6 12 21744362 - Gm4036 NNNAGAGGAAAGAGAAACGG NGG 2 0.1294 Tier III
92 NC_000082.6 16 76022649 - Gm15555 NNNAGAGAAAAGAGAAACAG NGG 2 0.1261 Tier III
93 NC_000073.6 7 76359922 + Gm30774 NNNAGAGAAAAAAGAAAGGT NGG 2 0.1244 Tier III
94 NC_000069.6 3 65197887 + A330015K06Rik NNNAGAGAAAAGAGAAACTG NGG 2 0.1176 Tier III
95 NC_000076.6 10 97843688 - Gm10754 NNNAGAGAAAAGAGAATCAT NGG 2 0.0952 Tier III
96 NC_000076.6 10 25644691 - Gm29571 NNNAGAGAAAAGAGAAACGC NGG 1 0.0909 Tier III
97 NC_000081.6 15 18059736 - Gm41277 NNNAGAGAAAAGAGAAACCG NGG 2 0.0791 Tier III
98 NC_000078.6 12 113486357 - Igh NNNAGAGAAAAGAGAAACGA NGA 2 0.0391 Tier III
99 NC_000077.6 11 90215145 + Gm42089 NNNAGAGAAAAGAGAAAGGG NGG 2 0.0235 Tier III
100 NC_000079.6 13 48101167 + A330033J07Rik NNNAGAGAAAAGAGAAAGGG NGG 2 0.0235 Tier III
101 NC_000082.6 16 26267621 + Gm41436 NNNAGAGAAAAGAGAAAAGT NGT 2 0.0087 Tier III
102 NC_000073.6 7 132907205 - 1500002F19Rik NNNAGAGAAAAGAGACAGGT NGG 2 0.0 Tier III
Download CSV

Other clones with same target sequence:

(none)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.