Construct: sgRNA BRDN0001146113
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- ATGAGCGAGATTATCGGGAC
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- CLK4 (57396)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 77798
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000005.10 |
5 |
178618736 |
- |
CLK4 |
NNNAGCGAGATTATCGGGAC |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000015.10 |
15 |
57242056 |
- |
TCF12 |
NNNAGCCAGATTATTGGGAC |
NGG |
2 |
0.0458 |
Tier II |
| 3 |
NC_000006.12 |
6 |
54128630 |
+ |
MLIP |
NNNAGCGAGATTATGGGGAC |
NGA |
2 |
0.0035 |
Tier II |
| 4 |
NC_000007.14 |
7 |
38881389 |
- |
VPS41 |
NNNAGTGAGATTATCTGGAC |
NGG |
2 |
0.0 |
Tier II |
| 5 |
NC_000013.11 |
13 |
112031612 |
+ |
SOX1-OT |
NNNAGCGCGATTATCTGGAC |
NGG |
2 |
0.0 |
Tier III |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000077.6 |
11 |
51271843 |
+ |
Clk4 |
NNNAGAGAGATTATCGGGAC |
NGG |
1 |
0.9286 |
Tier I |
| 2 |
NC_000079.6 |
13 |
12086232 |
+ |
Ryr2 |
NNNAGAGAGATTATGGGGAC |
NGG |
2 |
0.0464 |
Tier II |
Other clones with same target sequence:
(none)
