Construct: sgRNA BRDN0001146136
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- GAAGTACGCCTACCTCAACG
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- PFKP (5214)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 77626
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000010.11 |
10 |
3103821 |
+ |
PFKP |
NNNGTACGCCTACCTCAACG |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000019.10 |
19 |
19105595 |
+ |
SLC25A42 |
NNNCTACACCTACCTCAACG |
NGG |
2 |
0.5294 |
Tier I |
| 3 |
NC_000023.11 |
X |
30308220 |
- |
NR0B1 |
NNNGTACGCCTACCTCAAGG |
NGA |
2 |
0.0087 |
Tier I |
| 4 |
NC_000001.11 |
1 |
9760434 |
+ |
CLSTN1 |
NNNGTACGCCTACCTCAAGG |
NGC |
2 |
0.0028 |
Tier II |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000079.6 |
13 |
6621010 |
- |
Pfkp |
NNNGTATTCCTACCTCAACG |
NGG |
2 |
0.5078 |
Tier I |
| 2 |
NC_000084.6 |
18 |
80224483 |
+ |
Txnl4a |
NNNGCACGCCTACCCCAACG |
NGG |
2 |
0.2727 |
Tier II |
| 3 |
NC_000072.6 |
6 |
8331531 |
- |
Umad1 |
NNNGTACGCCTACCACAACG |
NGT |
2 |
0.0093 |
Tier II |
Other clones with same target sequence:
(none)
