Construct: sgRNA BRDN0001146260

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
CACTGCCCTTAACACCAGTG

Original Target:

Taxon:
Homo sapiens (human)
Gene:
MINK1 (50488)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
76260

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000017.11 17 4892192 + MINK1 NNNTGCCCTTAACACCAGTG NGG 0 1.0 Tier I
2 NC_000022.11 22 41479653 + ACO2 NNNTGCCCTAAACACCAGTG NGG 1 0.8571 Tier II
3 NC_000018.10 18 36210313 - MOCOS NNNTGCCCTGAACACCAGTG NGG 1 0.5 Tier II
4 NC_000002.12 2 217835296 - TNS1 NNNTGCCCTGAGCACCAGTG NGG 2 0.3611 Tier II
5 NC_000020.11 20 58660456 + STX16 NNNTGTCCTTAAAACCAGTG NGG 2 0.3571 Tier II
6 NC_000005.10 5 41915307 + RIMOC1 NNNTGCCCTTAATACCACTG NGG 2 0.3333 Tier II
7 NC_000006.12 6 18459950 - RNF144B NNNTGCCTTTAACACCAGGG NGG 2 0.2188 Tier II
8 NC_000006.12 6 24713794 + C6orf62 NNNTGCCCTTAACACTAGAG NGG 2 0.0879 Tier II
9 NC_000017.11 17 2020326 - RTN4RL1 NNNTGCCCTTAACCCCAGTG NCG 2 0.023 Tier II
10 NC_000017.11 17 17058107 + MPRIP NNNTGCCCTTCACACCAGTG NTG 2 0.0156 Tier II
11 NC_000001.11 1 57825528 - DAB1 NNNTGCCCTTAACACCTGTG NTG 2 0.0052 Tier II
12 NC_000020.11 20 58660456 + STX16-NPEPL1 NNNTGTCCTTAAAACCAGTG NGG 2 0.3571 Tier III
13 NC_000002.12 2 191198983 - LOC105373804 NNNTGCCCTAATCACCAGTG NGG 2 0.2857 Tier III
14 NC_000002.12 2 27729873 - LOC105374378 NNNTGCCTTTAACACCAGCG NGG 2 0.2414 Tier III
15 NC_000016.10 16 11328896 - LOC105371082 NNNTGCCCTGACCACCAGTG NGG 2 0.1316 Tier III
16 NC_000004.12 4 33915508 - LOC101928622 NNNTGCTCTTAACACCTGTG NGG 2 0.1083 Tier III
17 NC_000017.11 17 2020326 - LOC105371485 NNNTGCCCTTAACCCCAGTG NCG 2 0.023 Tier III
18 NC_000017.11 17 2020326 - LOC105371486 NNNTGCCCTTAACCCCAGTG NCG 2 0.023 Tier III
19 NC_000004.12 4 25465548 - LOC105374536 NNNTGACCTTAACACCAGTG NGC 2 0.0206 Tier III
20 NC_000006.12 6 68297341 - LINC02549 NNNTGCCCTTCACAGCAGTG NGG 2 0.02 Tier III
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Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000077.6 11 70608384 + Mink1 NNNTGCCCTTAACACCAGTG NGG 0 1.0 Tier I
2 NC_000073.6 7 16549130 - Arhgap35 NNNTGCCCTTAACAACAGTG NTG 2 0.0087 Tier I
3 NC_000083.6 17 70673758 - Dlgap1 NNNTGCCTGTAACACCAGTG NGG 2 0.5417 Tier II
4 NC_000083.6 17 10798796 + Pacrg NNNTGCCCTTAACTCAAGTG NGG 2 0.5333 Tier II
5 NC_000067.6 1 175097159 + Rgs7 NNNTCCCCTTAACACCACTG NGG 2 0.3741 Tier II
6 NC_000073.6 7 98060906 - Myo7a NNNTGCCATTAAAACCAGTG NGG 2 0.25 Tier II
7 NC_000079.6 13 103184107 - Mast4 NNNTGCTCTTAACACCAGTG NAG 2 0.2106 Tier II
8 NC_000080.6 14 30967742 + Nek4 NNNTGCCTTTAACCCCAGTG NGG 2 0.1875 Tier II
9 NC_000082.6 16 22516280 + Dgkg NNNGGCCCTTACCACCAGTG NGG 2 0.1645 Tier II
10 NC_000079.6 13 64099240 - Slc35d2 NNNTGCGCTTAACACCAGGG NGG 2 0.1176 Tier II
11 NC_000070.6 4 99203062 + Atg4c NNNTGCCCTCAACACCTGTG NGG 2 0.0711 Tier II
12 NC_000072.6 6 91400340 + Wnt7a NNNTGCCCTGAAGACCAGTG NGG 2 0.0682 Tier II
13 NC_000075.6 9 89966565 + Rasgrf1 NNNTGCCTTTAACACCAGTG NTG 2 0.0341 Tier II
14 NC_000074.6 8 124598092 + Capn9 NNNTGCCCTCAACACCAGTG NTG 2 0.0208 Tier II
15 NC_000068.7 2 144139149 + Banf2os NNNTGCCAATAACACCAGTG NGG 2 0.6036 Tier III
16 NC_000083.6 17 70673758 - Gm36746 NNNTGCCTGTAACACCAGTG NGG 2 0.5417 Tier III
17 NC_000082.6 16 22516280 + 9230117E06Rik NNNGGCCCTTACCACCAGTG NGG 2 0.1645 Tier III
18 NC_000068.7 2 92810637 + Gm32413 NNNTGCCCTTACCAGCAGTG NGG 2 0.0132 Tier III
19 NC_000068.7 2 92810637 + Gm39880 NNNTGCCCTTACCAGCAGTG NGG 2 0.0132 Tier III
Download CSV

Other clones with same target sequence:

(none)