Construct: sgRNA BRDN0001146318
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- GCTGCTTTCCCATACCCGCG
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- MAP3K6 (9064)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 76014
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000001.11 |
1 |
27358820 |
+ |
MAP3K6 |
NNNGCTTTCCCATACCCGCG |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000010.11 |
10 |
97321194 |
- |
FRAT1 |
NNNGCTTTCCCACACCCGCG |
NTG |
2 |
0.0308 |
Tier II |
| 3 |
NC_000001.11 |
1 |
943204 |
- |
SAMD11 |
NNNGCTTTCCCATACCCGCC |
NGT |
2 |
0.0069 |
Tier II |
| 4 |
NC_000017.11 |
17 |
40121403 |
+ |
LOC124904001 |
NNNTCTCTCCCATACCCGCG |
NGG |
2 |
0.25 |
Tier III |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000070.6 |
4 |
108780599 |
- |
Zfyve9 |
NNNGCTTTCCCGGACCCGCG |
NGG |
2 |
0.1884 |
Tier II |
| 2 |
NC_000082.6 |
16 |
34029671 |
- |
Kalrn |
NNNGCTTTCCCATCCCAGCG |
NGG |
2 |
0.1 |
Tier II |
| 3 |
NC_000077.6 |
11 |
33993709 |
- |
4930469K13Rik |
NNNGCTTTCCCATCCCCGGG |
NGG |
2 |
0.0268 |
Tier III |
Other clones with same target sequence:
(none)
