Construct: sgRNA BRDN0001146440
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- GAGCATACCGCAGTACCCTG
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- CAMK4 (814)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 77224
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000005.10 |
5 |
111449195 |
- |
CAMK4 |
NNNCATACCGCAGTACCCTG |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000011.10 |
11 |
66844159 |
- |
RCE1 |
NNNCATACCGGAGGACCCTG |
NGG |
2 |
0.0 |
Tier II |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000084.6 |
18 |
33158893 |
- |
Camk4 |
NNNCGTACCGCAGTACCCCG |
NGG |
2 |
0.1986 |
Tier I |
| 2 |
NC_000067.6 |
1 |
84893193 |
- |
Fbxo36 |
NNNCATACAACAGTACCCTG |
NGG |
2 |
0.8 |
Tier II |
| 3 |
NC_000072.6 |
6 |
53294360 |
- |
Creb5 |
NNNCACACCTCAGTACCCTG |
NGG |
2 |
0.7386 |
Tier II |
| 4 |
NC_000076.6 |
10 |
39513766 |
+ |
Fyn |
NNNTACACCGCAGTACCCTG |
NGG |
2 |
0.7273 |
Tier II |
| 5 |
NC_000073.6 |
7 |
80276763 |
- |
Vps33b |
NNNCAGACCGCAGTACCCTC |
NGG |
2 |
0.2449 |
Tier II |
| 6 |
NC_000083.6 |
17 |
65265614 |
+ |
Tmem232 |
NNNAATACCGCAGTACCCAG |
NGG |
2 |
0.2406 |
Tier II |
Other clones with same target sequence:
(none)
