Construct: sgRNA BRDN0001146443

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
TGGAAGGGTCAGGCATTAAG

Original Target:

Taxon:
Homo sapiens (human)
Gene:
PRKRA (8575)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
76299

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000002.12 2 178444480 + PRKRA NNNAAGGGTCAGGCATTAAG NGG 0 1.0 Tier I
2 NC_000002.12 2 46375712 + EPAS1 NNNAAGGGTCAGGTAGTAAG NGG 2 0.2538 Tier I
3 NC_000001.11 1 66224118 - PDE4B NNNAAGAGTCAGGCATCAAG NGG 2 0.7059 Tier II
4 NC_000012.12 12 100366419 - SLC17A8 NNNAAGGGTCAGGTAATAAG NGG 2 0.6667 Tier II
5 NC_000005.10 5 178728255 - ZNF354A NNNAAGGGGCAGGCATTAAA NGG 2 0.5804 Tier II
6 NC_000010.11 10 60339142 + ANK3 NNNAAGGTTCAGACATTAAG NGG 2 0.5769 Tier II
7 NC_000001.11 1 27753309 + FAM76A NNNAAGGGTAGGGCATTAAG NGG 2 0.5633 Tier II
8 NC_000017.11 17 19847947 - ULK2 NNNAAGGGTCACACATTAAG NGG 2 0.4887 Tier II
9 NC_000001.11 1 158003558 - KIRREL1 NNNGAGGGTCAGGCATCAAG NGG 2 0.4412 Tier II
10 NC_000011.10 11 16965473 - PLEKHA7 NNNAAGTGTCAGGCACTAAG NGG 2 0.381 Tier II
11 NC_000012.12 12 67274315 + CAND1 NNNAATTGTCAGGCATTAAG NGG 2 0.381 Tier II
12 NC_000006.12 6 43869078 + POLR1C NNNAAGGGTCAGGAAATAAG NGG 2 0.3182 Tier II
13 NC_000007.14 7 103382063 + SLC26A5 NNNAAGGTTCAGGCATTTAG NGG 2 0.3125 Tier II
14 NC_000002.12 2 88109866 - SMYD1 NNNAAGGGCCAGGCATTCAG NGG 2 0.1758 Tier II
15 NC_000001.11 1 234206261 + SLC35F3 NNNCTGGGTCAGGCATTAAG NGG 2 0.1283 Tier II
16 NC_000008.11 8 26591351 + DPYSL2 NNNGAGGGTCAGGCATTCAG NGG 2 0.119 Tier II
17 NC_000002.12 2 130920396 + ARHGEF4 NNNAAGGGCCAGGCATGAAG NGG 2 0.1086 Tier II
18 NC_000012.12 12 18521514 + PIK3C2G NNNCAGGGTCAGGCATGAAG NGG 2 0.0415 Tier II
19 NC_000011.10 11 126951693 + KIRREL3 NNNAAGTGTCAGGCATTAAG NGA 2 0.0397 Tier II
20 NC_000002.12 2 153360622 - GALNT13 NNNAAGGGTCAGGCCTGAAG NGG 2 0.0321 Tier II
21 NC_000015.10 15 78633913 + CHRNB4 NNNAAGGGTCAGGGAATAAG NGG 2 0.0 Tier II
22 NC_000008.11 8 29767997 + LINC02099 NNNAAGGGCCAAGCATTAAG NGG 2 0.8615 Tier III
23 NC_000006.12 6 43869078 + LOC105375068 NNNAAGGGTCAGGAAATAAG NGG 2 0.3182 Tier III
24 NC_000006.12 6 43869078 + LOC105375070 NNNAAGGGTCAGGAAATAAG NGG 2 0.3182 Tier III
25 NC_000024.10 Y 21388826 + PRORY NNNATGTGTCAGGCATTAAG NGG 2 0.2078 Tier III
26 NC_000008.11 8 26591351 + LOC124901916 NNNGAGGGTCAGGCATTCAG NGG 2 0.119 Tier III
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Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000068.7 2 76640299 + Prkra NNNATGGATCAGGCATTAAG NGG 2 0.3636 Tier I
2 NC_000081.6 15 76865030 - Zfp251 NNNAAGGATCAGGCATTAAA NGG 2 0.9375 Tier II
3 NC_000080.6 14 99892275 - Klf12 NNNAGGGGTCAAGCATTAAG NGG 2 0.672 Tier II
4 NC_000068.7 2 130503834 + Ptpra NNNAAGGGTCCAGCATTAAG NGG 2 0.3733 Tier II
5 NC_000071.6 5 71645114 + Gabra4 NNNAAGAGTCAGGCATTAAG NAG 2 0.2593 Tier II
6 NC_000086.7 X 105105789 - Pbdc1 NNNAGGGGTCAGGCAGTAAG NGG 2 0.2492 Tier II
7 NC_000076.6 10 78346338 - Agpat3 NNNAAGGGTCAGGCAGCAAG NGG 2 0.2443 Tier II
8 NC_000080.6 14 55599427 + Rnf31 NNNGAGGGTCAGGAATTAAG NGG 2 0.2188 Tier II
9 NC_000080.6 14 115549179 + Gpc5 NNNAAGGGTCAGACTTTAAG NGG 2 0.1846 Tier II
10 NC_000070.6 4 102393468 + Pde4b NNNAAGGGTCAGGAATTGAG NGG 2 0.14 Tier II
11 NC_000083.6 17 83505094 + Cox7a2l NNNAAGGGTCAGCCATTAAG NAG 2 0.1092 Tier II
12 NC_000083.6 17 56423877 + Ptprs NNNAAGGGTCAGGCTTTATG NGG 2 0.1077 Tier II
13 NC_000067.6 1 20893577 - Paqr8 NNNAAGGGTCAGGCATTAGG NAG 2 0.0972 Tier II
14 NC_000080.6 14 31408657 + Sh3bp5 NNNAAGGGTCAGCCATTAAG NGA 2 0.0292 Tier II
15 NC_000078.6 12 8325404 + Hs1bp3 NNNAAGGGTCAGGCAGTAAG NGT 2 0.0056 Tier II
16 NC_000067.6 1 150105131 + Ptgs2 NNNAAGGATCAGGGATTAAG NGG 2 0.0 Tier II
17 NC_000075.6 9 95445343 + Gm32133 NNNAAGGTTCAGGCATTAAG NGC 2 0.0139 Tier III
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Other clones with same target sequence:

(none)