Construct: sgRNA BRDN0001146537

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
AGATCCAGACCCAGACCACG

Original Target:

Taxon:
Homo sapiens (human)
Gene:
PRKD1 (5587)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
77228

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000014.9 14 29636315 - PRKD1 NNNTCCAGACCCAGACCACG NGG 0 1.0 Tier I
2 NC_000022.11 22 19724626 + GP1BB NNNTGCAGGCCCAGACCACG NGG 2 0.4 Tier II
3 NC_000019.10 19 10163657 - DNMT1 NNNTCCTGACACAGACCACG NGG 2 0.3281 Tier II
4 NC_000002.12 2 240521323 + ANKMY1 NNNTCCAGACCCTGACCACT NGG 2 0.21 Tier II
5 NC_000022.11 22 41914818 - SHISA8 NNNTCCAGACCCAGCCCACT NGG 2 0.1909 Tier II
6 NC_000006.12 6 44267525 + POLR1C NNNTCCAGACCCAGACCAAC NGG 2 0.1837 Tier II
7 NC_000002.12 2 102525498 - SLC9A4 NNNTCCAGACCCAGACCCCA NGG 2 0.1786 Tier II
8 NC_000013.11 13 98729782 + SLC15A1 NNNTCCCGACCCTGACCACG NGG 2 0.1313 Tier II
9 NC_000022.11 22 19724626 + SEPT5-GP1BB NNNTGCAGGCCCAGACCACG NGG 2 0.4 Tier III
10 NC_000001.11 1 83822222 + LOC101927560 NNNTCCAGACACAGACCAAG NGG 2 0.3214 Tier III
11 NC_000001.11 1 83822222 + LINC01725 NNNTCCAGACACAGACCAAG NGG 2 0.3214 Tier III
12 NC_000006.12 6 40965894 + LOC101929555 NNNTCCAGGCCCAGACCATG NGG 2 0.3077 Tier III
13 NC_000023.11 X 102571352 - NXF4 NNNTCCATACCCAGACCACC NGG 2 0.2679 Tier III
14 NC_000017.11 17 75078708 + TRIM80P NNNTCCAGAACCAGCCCACG NGG 2 0.2364 Tier III
15 NC_000015.10 15 77891007 + CSPG4P13 NNNTCCAGACCCAGCCCACC NGG 2 0.1169 Tier III
16 NC_000002.12 2 28386769 - FOSL2-AS1 NNNTCCAGGCCCAGACCAGG NGG 2 0.0833 Tier III
17 NC_000002.12 2 28386769 - LOC105374383 NNNTCCAGGCCCAGACCAGG NGG 2 0.0833 Tier III
18 NC_000009.12 9 78358758 - LOC107987083 NNNTCCAGACCCAGACCATG NGA 2 0.0321 Tier III
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Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000068.7 2 76116621 - Pde11a NNNTCCAGACCCAAACCACC NGG 2 0.3214 Tier II
2 NC_000082.6 16 43605730 + Zbtb20 NNNTCCAGACCCACACCACT NGG 2 0.3 Tier II
3 NC_000075.6 9 42871764 - Grik4 NNNTACAGACCCAGACCACC NGG 2 0.2449 Tier II
4 NC_000072.6 6 88004492 + Rab7 NNNTCCATAGCCAGACCACG NGG 2 0.2431 Tier II
5 NC_000069.6 3 115954773 - Slc30a7 NNNTCCAGACCCAGAGCACA NGG 2 0.1442 Tier II
6 NC_000083.6 17 34627327 - Ppt2 NNNTCCAGACACAGACCAGG NGG 2 0.0938 Tier II
7 NC_000080.6 14 47035209 - Samd4 NNNTGCAGACCCAGACCAGG NGG 2 0.075 Tier II
8 NC_000069.6 3 116290331 - Cdc14a NNNTCCAGAGCCAGAGCACG NGG 2 0.0598 Tier II
9 NC_000077.6 11 87443066 - Tex14 NNNTCCAGACCCCGTCCACG NGG 2 0.0421 Tier II
10 NC_000077.6 11 87448456 - Tex14 NNNTCCAGACCCCGTCCACG NGG 2 0.0421 Tier II
11 NC_000077.6 11 87462115 - Tex14 NNNTCCAGACCCCGTCCACG NGG 2 0.0421 Tier II
12 NC_000077.6 11 87471197 - Tex14 NNNTCCAGACCCCGTCCACG NGG 2 0.0421 Tier II
13 NC_000077.6 11 119421179 - Rnf213 NNNTCCAGACCCAGACCATG NTG 2 0.018 Tier II
14 NC_000081.6 15 3565815 + Ghr NNNTCAAGACCCAGACCACG NGT 2 0.015 Tier II
15 NC_000069.6 3 116136678 + 5330425B07Rik NNNTGCAGACCCAGACCACC NGG 2 0.2571 Tier III
16 NC_000077.6 11 87443066 - LOC115487798 NNNTCCAGACCCCGTCCACG NGG 2 0.0421 Tier III
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Other clones with same target sequence:

(none)