Construct: sgRNA BRDN0001146590
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- AGTTGCGGTCTATCTCCCAT
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- FRK (2444)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 76242
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000006.12 |
6 |
115967670 |
+ |
FRK |
NNNTGCGGTCTATCTCCCAT |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000023.11 |
X |
71297949 |
+ |
NONO |
NNNTGCGGTATATCTCCCAT |
NTG |
2 |
0.0338 |
Tier I |
| 3 |
NC_000010.11 |
10 |
98396900 |
- |
PYROXD2 |
NNNTGGGTTCTATCTCCCAT |
NGG |
2 |
0.3125 |
Tier II |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000076.6 |
10 |
34586216 |
- |
Frk |
NNNTGCGGTCTATCTCCCAC |
NGG |
1 |
0.0909 |
Tier I |
| 2 |
NC_000086.7 |
X |
101444801 |
+ |
Nono |
NNNTGCGGTATATCTCCCAT |
NTG |
2 |
0.0338 |
Tier I |
| 3 |
NC_000074.6 |
8 |
10446286 |
- |
Myo16 |
NNNTGCTGTCTGTCTCCCAT |
NGG |
2 |
0.4127 |
Tier II |
| 4 |
NC_000068.7 |
2 |
6210828 |
+ |
Echdc3 |
NNNTGAGGTCTCTCTCCCAT |
NGG |
2 |
0.2444 |
Tier II |
| 5 |
NC_000073.6 |
7 |
67130768 |
+ |
Adamts17 |
NNNTGTGGTCTAGCTCCCAT |
NGG |
2 |
0.2422 |
Tier II |
| 6 |
NC_000068.7 |
2 |
6210828 |
+ |
A230108P19Rik |
NNNTGAGGTCTCTCTCCCAT |
NGG |
2 |
0.2444 |
Tier III |
Other clones with same target sequence:
(none)
