Construct: sgRNA BRDN0001146728

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
GCAGCCAGTACACATGTACC

Original Target:

Taxon:
Homo sapiens (human)
Gene:
PTK7 (5754)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
78024

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000006.12 6 43129080 - PTK7 NNNGCCAGTACACATGTACC NGG 0 1.0 Tier I
2 NC_000012.12 12 82961474 + TMTC2 NNNCCGAGTACACATGTACC NGG 2 0.2647 Tier II
3 NC_000010.11 10 125983661 + FANK1 NNNGGCAGTACAAATGTACC NGG 2 0.2308 Tier II
4 NC_000002.12 2 50388435 - NRXN1 NNNGCCAGTACACATGTACT NGA 2 0.0208 Tier II
5 NC_000007.14 7 94564194 + CASD1 NNNGCCAGTAGACATGTACC NGA 2 0.0174 Tier II
6 NC_000012.12 12 111268482 + CUX2 NNNGCCAGTACACATGTGCC NGC 2 0.0089 Tier II
Download CSV

Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000083.6 17 46591700 + Ptk7 NNNGCCAGTACACGTGCACC NGG 2 0.3294 Tier I
2 NC_000086.7 X 134693552 + Armcx4 NNNGCCAGTGCACATGAACC NGG 2 0.2963 Tier I
3 NC_000079.6 13 37949296 + Rreb1 NNNCCCAGTACACATGCACC NGG 2 0.3737 Tier II
4 NC_000071.6 5 101875148 - Wdfy3 NNNGTCTGTACACATGTACC NGG 2 0.2784 Tier II
5 NC_000072.6 6 82971114 + M1ap NNNGCCAGTACACATGAAAC NGG 2 0.2286 Tier II
6 NC_000073.6 7 110275572 + Swap70 NNNGGCAGTACAGATGTACC NGG 2 0.0818 Tier II
7 NC_000075.6 9 57136443 - Man2c1 NNNGCCAGGACACAGGTACC NGG 2 0.031 Tier II
8 NC_000084.6 18 39052821 - Arhgap26 NNNGGCAGTACACAGGTACC NGG 2 0.03 Tier II
9 NC_000067.6 1 128008147 + Zranb3 NNNGCCTGTACACATGTACC NTG 2 0.017 Tier II
10 NC_000073.6 7 124263256 + Hs3st4 NNNCCCAGTACACATGTACC NGT 2 0.0085 Tier II
11 NC_000071.6 5 37656693 - Stk32b NNNGCCAGTGCACATCTACC NGG 2 0.0 Tier II
12 NC_000070.6 4 46334724 + Gm12446 NNNGCCAGTACACATGAGCC NGG 2 0.2133 Tier III
13 NC_000082.6 16 12846884 + 1700003L19Rik NNNGCCTGTACACATGTGCC NGG 2 0.175 Tier III
Download CSV

Other clones with same target sequence:

(none)

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