Construct: sgRNA BRDN0001146817
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- TGGATGAAGTTTGACGCACA
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- PCK1 (5105)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 76289
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000020.11 |
20 |
57563723 |
+ |
PCK1 |
NNNATGAAGTTTGACGCACA |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000008.11 |
8 |
104216523 |
- |
RIMS2 |
NNNATGAAGTTTGAGGCACA |
NTG |
2 |
0.0019 |
Tier II |
| 3 |
NC_000007.14 |
7 |
102833245 |
+ |
FAM185A |
NNNATGAAGTTTGACTCATA |
NGG |
2 |
0.0 |
Tier II |
| 4 |
NC_000007.14 |
7 |
102833245 |
+ |
FBXL13 |
NNNATGAAGTTTGACTCATA |
NGG |
2 |
0.0 |
Tier II |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000068.7 |
2 |
173156096 |
+ |
Pck1 |
NNNATGAAGTTTGATGCCCA |
NGG |
2 |
0.0127 |
Tier I |
| 2 |
NC_000080.6 |
14 |
50827294 |
+ |
Tep1 |
NNNATGAAGTATAACGCACA |
NGG |
2 |
0.6923 |
Tier II |
| 3 |
NC_000079.6 |
13 |
31945646 |
+ |
Gmds |
NNNATAAAGTTTGAAGCACA |
NGG |
2 |
0.2222 |
Tier II |
| 4 |
NC_000069.6 |
3 |
53517518 |
- |
Frem2 |
NNNATTAAGTTTGACGCAGA |
NGG |
2 |
0.0833 |
Tier II |
| 5 |
NC_000086.7 |
X |
100211117 |
- |
Eda |
NNNATGAAGTTTGAGGAACA |
NGG |
2 |
0.0233 |
Tier II |
| 6 |
NC_000073.6 |
7 |
125578505 |
+ |
Il4ra |
NNNCTGAAGTTTGAGGCACA |
NGG |
2 |
0.0176 |
Tier II |
Other clones with same target sequence:
(none)
