Construct: sgRNA BRDN0001146833

Construct Description:

Construct Type:
sgRNA
Other Identifiers:
n/a
DNA Barcode:
AGGTCACTAAACTTGTATTG

Original Target:

Taxon:
Homo sapiens (human)
Gene:
MAGI1 (9223)
Gene Description:
n/a
CRISPR Mechanism
CRISPRko

Vector Information:

Vector Backbone:
pXPR_003
Pol II Cassette 1:
EF1A-PuroR
Pol II Cassette 2:
n/a
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Additional Information:

Addgene ID:
78067

Gene matches for this target sequence (CRISPRko, PAM=NGG, human):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000003.12 3 65429990 + MAGI1 NNNTCACTAAACTTGTATTG NGG 0 1.0 Tier I
2 NC_000007.14 7 67154306 + TYW1 NNNTCAATAAACTTGTATTT NGG 2 0.525 Tier II
3 NC_000007.14 7 72657890 - TYW1B NNNTCAATAAACTTGTATTT NGG 2 0.525 Tier II
4 NC_000008.11 8 51738150 - PXDNL NNNTCACTATATTTGTATTG NGG 2 0.4751 Tier II
5 NC_000006.12 6 125870738 + NCOA7 NNNTCTGTAAACTTGTATTG NGG 2 0.3361 Tier II
6 NC_000007.14 7 107127506 - PRKAR2B NNNTCACTAAACTTGTATTC NAG 2 0.1111 Tier II
7 NC_000018.10 18 42848380 - RIT2 NNNTCACTTAACTTGTATTG NGA 2 0.0417 Tier II
8 NC_000004.12 4 86756729 - PTPN13 NNNTCACAAAACTTGTATTG NTG 2 0.0312 Tier II
9 NC_000012.12 12 21322019 - SLCO1A2 NNNTCAATAAACTTGTATTG NGT 2 0.0121 Tier II
10 NC_000023.11 X 8331626 - LOC107985675 NNNTCACAAAACTTGTATTA NGG 2 0.75 Tier III
11 NC_000011.10 11 88387118 - LOC101929174 NNNTCAATAAACTTATATTG NGG 2 0.7059 Tier III
12 NC_000001.11 1 80620700 - LINC01781 NNNTCATTAAACATGTATTG NGG 2 0.5625 Tier III
13 NC_000007.14 7 67154306 + LOC124901666 NNNTCAATAAACTTGTATTT NGG 2 0.525 Tier III
14 NC_000002.12 2 17122861 + RN7SKP168 NNNTCACTAAATCTGTATTG NGG 2 0.4251 Tier III
15 NC_000006.12 6 84023735 - LINC02857 NNNTCAATAAATTTGTATTG NGG 2 0.4038 Tier III
16 NC_000010.11 10 65684435 + LINC01515 NNNTCCCTAAACTTGTAATG NGG 2 0.303 Tier III
17 NC_000012.12 12 5172612 + LOC105369617 NNNTCACAAAACTTGTATTG NAG 2 0.2074 Tier III
18 NC_000008.11 8 134865942 + LOC101927845 NNNTCACTGAACTTGTATGG NGG 2 0.1667 Tier III
19 NC_000013.11 13 67270772 - LOC105370246 NNNTCACTTAACTTTTATTG NGG 2 0.0857 Tier III
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Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):

Reference Sequence Chromosome Cut Position Match Strand Match Gene Match Sequence PAM Seq. Mismatches[?] CFD Score[?] Match Tier[?]
1 NC_000072.6 6 93745904 + Magi1 NNNTCACTAAACTTGTATTA NGG 1 0.9375 Tier I
2 NC_000085.6 19 13027419 - Olfr1453 NNNTCACAAAAATTGTATTG NGG 2 0.5714 Tier I
3 NC_000071.6 5 45613792 + Fam184b NNNTCACCAAACTTGTATTA NGG 2 0.9375 Tier II
4 NC_000072.6 6 54852284 + Znrf2 NNNTCACTAAATTTGTATTA NGG 2 0.5048 Tier II
5 NC_000071.6 5 89219494 + Slc4a4 NNNTCAATAAGCTTGTATTG NGG 2 0.4875 Tier II
6 NC_000086.7 X 141346795 + Col4a6 NNNTCACTCAACTTGTAATG NGG 2 0.381 Tier II
7 NC_000069.6 3 153438454 - St6galnac3 NNNTCACAAAACTTGTATGG NGG 2 0.2 Tier II
8 NC_000085.6 19 56331302 - Nrap NNNTCACTAAAATTGTTTTG NGG 2 0.0952 Tier II
9 NC_000073.6 7 121099727 - Otoa NNNTCACTAAACTTGCTTTG NGG 2 0.0889 Tier II
10 NC_000075.6 9 105862298 + Col6a5 NNNTCACTAAAGTTTTATTG NGG 2 0.0635 Tier II
11 NC_000083.6 17 90461825 + Nrxn1 NNNTCACCAAACTTGTATTG NTG 2 0.039 Tier II
12 NC_000077.6 11 81457139 - Asic2 NNNTCATTAAACTTGTATTG NTG 2 0.0317 Tier II
13 NC_000077.6 11 29768718 - Eml6 NNNTCTCTAAACTTGTATTG NTG 2 0.0278 Tier II
14 NC_000067.6 1 137921041 - Gm4258 NNNTGACTAAACTTGTATTC NGG 2 0.2571 Tier III
15 NC_000081.6 15 61329557 - Gm29904 NNNTCACTAAACTTCTACTG NGG 2 0.1169 Tier III
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Other clones with same target sequence:

(none)