Construct: sgRNA BRDN0001147089
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- GAGGAAACGCAAGATGTACG
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- PRKAR1B (5575)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 76840
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000007.14 |
7 |
584541 |
- |
PRKAR1B |
NNNGAAACGCAAGATGTACG |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000005.10 |
5 |
70042691 |
+ |
LOC107986372 |
NNNGAAACGGAAGATGCACG |
NGG |
2 |
0.2745 |
Tier I |
| 3 |
NC_000005.10 |
5 |
70918108 |
+ |
LOC107986373 |
NNNGAAACGGAAGATGCACG |
NGG |
2 |
0.2745 |
Tier I |
| 4 |
NC_000008.11 |
8 |
62564521 |
- |
NKAIN3 |
NNNGAAAAGCAAGATGCACG |
NGG |
2 |
0.4588 |
Tier II |
| 5 |
NC_000011.10 |
11 |
126361304 |
- |
ST3GAL4 |
NNNGAAACGCAATATGTACA |
NGG |
2 |
0.2813 |
Tier II |
| 6 |
NC_000005.10 |
5 |
70042691 |
+ |
SERF1B |
NNNGAAACGGAAGATGCACG |
NGG |
2 |
0.2745 |
Tier II |
| 7 |
NC_000005.10 |
5 |
70918108 |
+ |
SERF1A |
NNNGAAACGGAAGATGCACG |
NGG |
2 |
0.2745 |
Tier II |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000071.6 |
5 |
139042468 |
- |
Prkar1b |
NNNGAAACGCAAGATGTATG |
NGG |
1 |
0.4615 |
Tier I |
| 2 |
NC_000074.6 |
8 |
105247115 |
- |
D230025D16Rik |
NNNGAAAGGCAAGATGTACC |
NGG |
2 |
0.2755 |
Tier II |
Other clones with same target sequence:
(none)
