Construct: sgRNA BRDN0001147239
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- CTTGGACAAGTTCTACCGGA
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- MAP2K3 (5606)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 76381
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000017.11 |
17 |
21302198 |
+ |
MAP2K3 |
NNNGGACAAGTTCTACCGGA |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000011.10 |
11 |
66334230 |
+ |
RIN1 |
NNNGGACATGTTCTGCCGGA |
NGG |
2 |
0.39 |
Tier I |
| 3 |
NC_000006.12 |
6 |
168648346 |
+ |
SMOC2 |
NNNGGACAAGTTCTCCTGGA |
NGG |
2 |
0.1273 |
Tier II |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000077.6 |
11 |
60944720 |
+ |
Map2k3 |
NNNGGATAAGTTCTACCGGA |
NGG |
1 |
0.8125 |
Tier I |
| 2 |
NC_000078.6 |
12 |
109037658 |
- |
Begain |
NNNGGACAAGCTGTACCGGA |
NGG |
2 |
0.0909 |
Tier I |
| 3 |
NC_000067.6 |
1 |
179113620 |
- |
Smyd3 |
NNNGGACAAGTGCTACAGGA |
NGG |
2 |
0.2333 |
Tier II |
| 4 |
NC_000082.6 |
16 |
56594719 |
+ |
Abi3bp |
NNNGGACAAGTTCTACTGGA |
NAG |
2 |
0.121 |
Tier II |
Other clones with same target sequence:
(none)
