Construct: sgRNA BRDN0001147410
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- GTCACTCGCACCTCACAATG
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- IGFN1 (91156)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 76823
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000001.11 |
1 |
201208480 |
+ |
IGFN1 |
NNNACTCGCACCTCACAATG |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000022.11 |
22 |
46609694 |
- |
GRAMD4 |
NNNACTCGCACTCCACAATG |
NGG |
2 |
0.4251 |
Tier II |
| 3 |
NC_000002.12 |
2 |
158113285 |
+ |
UPP2 |
NNNACTGGCACCACACAATG |
NGG |
2 |
0.3258 |
Tier II |
| 4 |
NC_000004.12 |
4 |
1726170 |
- |
TACC3 |
NNNACTCGCTGCTCACAATG |
NGG |
2 |
0.2206 |
Tier II |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000082.6 |
16 |
6756363 |
+ |
Rbfox1 |
NNNACCCGCTCCTCACAATG |
NGG |
2 |
0.8021 |
Tier II |
| 2 |
NC_000070.6 |
4 |
128561332 |
+ |
Csmd2 |
NNNACTCGGACCTCACAGTG |
NGG |
2 |
0.2476 |
Tier II |
| 3 |
NC_000077.6 |
11 |
113923974 |
- |
Sdk2 |
NNNCCTGGCACCTCACAATG |
NGG |
2 |
0.1661 |
Tier II |
| 4 |
NC_000082.6 |
16 |
90257016 |
- |
Scaf4 |
NNNACTCGTACCTCACAATG |
NTG |
2 |
0.0341 |
Tier II |
Other clones with same target sequence:
(none)
