Construct: sgRNA BRDN0001147569
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- AGGACGAAGAAAAGTTCTCG
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- TJP2 (9414)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 77827
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000009.12 |
9 |
69229208 |
- |
TJP2 |
NNNACGAAGAAAAGTTCTCG |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000004.12 |
4 |
107649239 |
+ |
PAPSS1 |
NNNACGGAGAAAAGTTTTCG |
NGG |
2 |
0.3294 |
Tier II |
| 3 |
NC_000017.11 |
17 |
78876879 |
- |
TIMP2 |
NNNATGAAGAAAAGTTCTCC |
NGG |
2 |
0.2727 |
Tier II |
| 4 |
NC_000004.12 |
4 |
113280620 |
- |
ANK2 |
NNNAAGAAGCAAAGTTCTCG |
NGG |
2 |
0.1905 |
Tier II |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000082.6 |
16 |
42044150 |
- |
Lsamp |
NNNAGGAAGAAAAGTTCTCA |
NGG |
2 |
0.5625 |
Tier II |
| 2 |
NC_000082.6 |
16 |
42044150 |
- |
Gm52229 |
NNNAGGAAGAAAAGTTCTCA |
NGG |
2 |
0.5625 |
Tier II |
| 3 |
NC_000081.6 |
15 |
20762741 |
+ |
Cdh12 |
NNNACACAGAAAAGTTCTCG |
NGG |
2 |
0.4375 |
Tier II |
Other clones with same target sequence:
(none)
