Construct: sgRNA BRDN0001147638
Construct Description:
- Construct Type:
- sgRNA
- Other Identifiers:
- n/a
- DNA Barcode:
- ATACCCAATAGAGTCCGAGG
Original Target:
- Taxon:
-
Homo sapiens (human)
- Gene:
- BRAF (673)
- Gene Description:
- n/a
- CRISPR Mechanism
- CRISPRko
Vector Information:
- Vector Backbone:
- pXPR_003
- Pol II Cassette 1:
- EF1A-PuroR
- Pol II Cassette 2:
- n/a
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Additional Information:
- Addgene ID:
- 76482
Gene matches for this target sequence (CRISPRko, PAM=NGG, human):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000007.14 |
7 |
140800375 |
+ |
BRAF |
NNNCCCAATAGAGTCCGAGG |
NGG |
0 |
1.0 |
Tier I |
| 2 |
NC_000006.12 |
6 |
109155151 |
- |
CEP57L1 |
NNNCCAAATAGAGTCCTAGG |
NGG |
2 |
0.2321 |
Tier II |
Gene matches for this target sequence (CRISPRko, PAM=NGG, mouse):
| Reference Sequence |
Chromosome |
Cut Position |
Match Strand |
Match Gene |
Match Sequence |
PAM Seq. |
Mismatches[?]Genomic matches are found by querying with a reduced sequence corresponding to the final 17mer of the 20mer guide target sequence, combined with the `GG` of the PAM sequence. Mismatches are assessed within this set of bases only, for a total of 19 possible matching bases. |
CFD Score[?]Off target matches are assesed via a Cutting Frequency Determination, or CFD score. This value provides an estimate of how specific mismatches affect the likelihood that an sgRNA will cut a given target sequence. For more information, see Doench, Fusi et al., Nature Biotechnology 2016. |
Match Tier[?]For a description of CRISPR match tiers, see How the sgRNA Designer Works. |
| 1 |
NC_000072.6 |
6 |
39660886 |
+ |
Braf |
NNNCCCAGTAGAGTCTGAGG |
NGG |
2 |
0.2256 |
Tier I |
| 2 |
NC_000078.6 |
12 |
79356006 |
+ |
Rad51b |
NNNCCCAGCAGAGTCCGAGG |
NGG |
2 |
0.6769 |
Tier II |
| 3 |
NC_000076.6 |
10 |
31973015 |
+ |
Nkain2 |
NNNACCAATAGAGTCTGAGG |
NGG |
2 |
0.2591 |
Tier II |
| 4 |
NC_000075.6 |
9 |
35061853 |
+ |
St3gal4 |
NNNCACAATAGAGTCCTAGG |
NGG |
2 |
0.1429 |
Tier II |
| 5 |
NC_000079.6 |
13 |
36284477 |
- |
Fars2 |
NNNCCCAATAGAGTCTGGGG |
NGG |
2 |
0.1231 |
Tier II |
| 6 |
NC_000076.6 |
10 |
31973015 |
+ |
Gm18189 |
NNNACCAATAGAGTCTGAGG |
NGG |
2 |
0.2591 |
Tier III |
Other clones with same target sequence:
(none)
